BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg930932
Length=808
Score E
Sequences producing significant alignments: (Bits) Value
ATCG00680.1 | Symbols: PSBB | photosystem II reaction center pr... 1155 0.0
> ATCG00680.1 | Symbols: PSBB | photosystem II reaction center
protein B | chrC:72371-73897 FORWARD LENGTH=1527
Length=1527
Score = 1155 bits (625), Expect = 0.0
Identities = 653/667 (98%), Gaps = 0/667 (0%)
Strand=Plus/Plus
Query 122 AGTTAGTACTGGACTGGCTGAAAATCAAAGTTTATCAGAAGCTTGGGCTAAAATTCCTGA 181
||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 861 AGTTAGTGCTGGACTGGCTGAAAATCAAAGTTTATCAGAAGCTTGGGCGAAAATTCCTGA 920
Query 182 AAAATTAGCTTTTTATGATTATATTGGTAATAATCCAGCAAAAGGGGGGTTATTCCGAGC 241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 921 AAAATTAGCTTTTTATGATTATATTGGTAATAATCCAGCAAAAGGGGGGTTATTCCGAGC 980
Query 242 AGGTTCAATGGACAATGGGGATGGAATAGCTGTTGGATGGTTGGGCCACCCTGTCTTTAG 301
||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||
Sbjct 981 GGGTTCAATGGACAATGGGGATGGAATAGCTGTTGGATGGTTAGGCCACCCCGTCTTTAG 1040
Query 302 GAATAAAGAAGGGCGTGAACTTTTTGTACGCCGTATGCCTACtttttttGAAACTTTTCC 361
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1041 AAATAAAGAAGGGCGTGAACTTTTTGTACGCCGCATGCCTACTTTTTTTGAAACTTTTCC 1100
Query 362 GGTTGTTTTGGTAGACGGAGATGGAATTGTTAGAGCCGACGTCCCGTTTAGAAGGGCAGA 421
||| ||||||||||||||||| |||||||||||||| |||||||||||||||||||||||
Sbjct 1101 GGTAGTTTTGGTAGACGGAGACGGAATTGTTAGAGCTGACGTCCCGTTTAGAAGGGCAGA 1160
Query 422 ATCAAAATATAGTGTCGAACAAGTAGGTGTAACTGTTGAGTTTTATGGTGGTGAACTCAA 481
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1161 ATCAAAATATAGTGTCGAACAAGTAGGTGTAACTGTTGAGTTTTATGGTGGTGAACTCAA 1220
Query 482 TGGAGTGAGTTATAGTGATCCCGCAACTGTGAAAAAATATGCTAGACGGGCTCAATTGGG 541
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1221 TGGAGTGAGTTATAGTGATCCCGCAACTGTGAAAAAATATGCTAGACGGGCTCAATTGGG 1280
Query 542 TGAGATTTTTGAATTAGATCGTGCGACTTTGAAATCCGATGGTGTTTTTCGTAGCAGCCC 601
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1281 TGAGATTTTTGAATTAGATCGTGCGACTTTGAAATCTGATGGTGTTTTTCGTAGCAGCCC 1340
Query 602 AAGAGGTTGGTTTACGTTTGGACATGCTTTGTTTGCTCTACTTTTCTTCTTTGGACACAT 661
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1341 AAGAGGTTGGTTTACGTTTGGACATGCTTCGTTTGCTCTACTTTTCTTCTTTGGACACAT 1400
Query 662 TTGGCATGGTGCTAGAACCCTCTTCAGAGATGTTTTTGCTGGTATTGATCCAGATTTGGA 721
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1401 TTGGCATGGTGCTAGAACCCTCTTCAGAGATGTTTTTGCTGGTATTGATCCAGATTTGGA 1460
Query 722 TGCTCAAGTGAAATTTGGGGCATTCCAAAAACTTGGAGATCCAACTACAAAACGACAAGC 781
|||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1461 TGCTCAAGTGGAATTCGGGGCATTCCAAAAACTTGGAGATCCAACTACAAAACGACAAGC 1520
Query 782 AGTCTGA 788
|||||||
Sbjct 1521 AGTCTGA 1527
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39333337101
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5