BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg930933

Length=373
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G06255.1 | Symbols: ELF4-L3 | ELF4-like 3 | chr2:2457573-245...   538    1e-152


> AT2G06255.1 | Symbols: ELF4-L3 | ELF4-like 3 | chr2:2457573-2459811 
FORWARD LENGTH=703
Length=703

 Score =  538 bits (291),  Expect = 1e-152
 Identities = 324/340 (95%), Gaps = 2/340 (1%)
 Strand=Plus/Plus

Query  14   CAGAGAATAATGGAGAGAGACACAATTTCTAGGATGATGGGAAATGGAGTTCAAATGGAT  73
            |||| |||||||||| |||||||||| |||||||||||||||| ||||||||||||||||
Sbjct  219  CAGATAATAATGGAGGGAGACACAATATCTAGGATGATGGGAAGTGGAGTTCAAATGGAT  278

Query  74   GGGAAGATTCTTCAAACGTTTGAGAAAAGTTTTGTTCAAGTGCAAAACATATTGGACCAC  133
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  279  GGGAAGATTCTTCAAACGTTTGAGAAAAGTTTTGTTCAAGTGCAAAACATATTGGACCAC  338

Query  134  AACAGATTGCTTATAAACGAGATAAACCAGAACCATGAGTCCAAAATCCCGGACAACCTC  193
            ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct  339  AACAGATTGCTTATAAACGAGATAAACCAAAACCATGAGTCCAAAATCCCGGACAACCTC  398

Query  194  GGACGAAACGTCAGTTTGATCCGAGAATTGAACAATAATGTGAGAAGGGTTGCTCATCTT  253
            |||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct  399  GGACGAAACGTCGGTTTGATCCGAGAATTGAACAATAACGTGAGAAGGGTTGCTCATCTT  458

Query  254  TATGTCGATCTTTCCAACAACTTTTCAAAATCCATGGAAGCTTCTTCTGAAGGAGACTCA  313
            ||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct  459  TATGTCGATCTTTCCAACAACTTCTCCAAATCCATGGAAGCTTCTTCTGAAGGAGACTCA  518

Query  314  GCAGGAGGAGGAGATCACATGA-GAATCAGGCCTGCTTAA  352
             ||| |||| ||| | ||| || |||||||||||||||||
Sbjct  519  TCAGAAGGACGAGGTAACA-GAAGAATCAGGCCTGCTTAA  557



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 17543444401


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5