BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg930934
Length=1964
Score E
Sequences producing significant alignments: (Bits) Value
AT2G06510.1 | Symbols: ATRPA1A, RPA1A, RPA70A, ATRPA70A | repli... 3109 0.0
> AT2G06510.1 | Symbols: ATRPA1A, RPA1A, RPA70A, ATRPA70A | replication
protein A 1A | chr2:2585018-2587686 FORWARD LENGTH=2117
Length=2117
Score = 3109 bits (1683), Expect = 0.0
Identities = 1846/1927 (96%), Gaps = 2/1927 (0%)
Strand=Plus/Plus
Query 18 ATCATGCCGGTGAGTTTGACTCCGAACGCCATCACGGCGATAAACGACGGCGACGTGAAT 77
||||||||||||||||||||||||||||| |||||||||||| | |||||||||||||||
Sbjct 107 ATCATGCCGGTGAGTTTGACTCCGAACGCAATCACGGCGATACATGACGGCGACGTGAAT 166
Query 78 TTGAAGCCGTTGTTACAGGTTTTAGAAATCAAAATAATAGGAAGAAGTCAAGAGAGAAGC 137
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 167 TTGAAGCCGTTGTTACAGGTTTTAGAAATCAAAATGATAGGAAGAAGTCAAGAGAGAAGC 226
Query 138 CAAGAGAGGTATCGTTTCCTCATTTCCGATGGTGTTTCAGCTCAACATGCTATGGTTGCG 197
|| ||||||||||||||||||||||| ||||||||||| ||||||||||||||||| |||
Sbjct 227 CAGGAGAGGTATCGTTTCCTCATTTCAGATGGTGTTTCTGCTCAACATGCTATGGTCGCG 286
Query 198 GTTCAGCTTAATGATCGAGTCAAATCAGGACAAGTTGAGAAAGGATCCATCGTTCAGCTG 257
||||||||||||||||||||||| ||||||||| ||||||||||||| ||||||||||||
Sbjct 287 GTTCAGCTTAATGATCGAGTCAAGTCAGGACAATTTGAGAAAGGATCTATCGTTCAGCTG 346
Query 258 ATTGATTACATTTGCAGCGACGTTAAAGGCCGCAAGCTTATTTTGGTGCTGAATATGGAG 317
|||||||||||||| ||||||||||||||||||||||||||| |||||||||| ||||||
Sbjct 347 ATTGATTACATTTGTAGCGACGTTAAAGGCCGCAAGCTTATTGTGGTGCTGAACATGGAG 406
Query 318 ACGATAGTACCACATTCTGAAACCATCGGGAACCCCACAATATTTGGAGAAACAGATACA 377
|||||||||| ||| ||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct 407 ACGATAGTACAACAGTCTGAAACCATTGGGAACCCTACAATATTTGGAGAAACAGATACA 466
Query 378 GAAGCCCAGAAGCCGCTTTCAGCTATGGGTAATATACCGCCTCCGAACAGGGTTGTTTTT 437
|||||||||||| | |||||| || ||| ||||||||||||||||||||||||||||||
Sbjct 467 GAAGCCCAGAAGACATTTTCAGGTACGGGCAATATACCGCCTCCGAACAGGGTTGTTTTT 526
Query 438 AATGAACCAACGGCTCAGCATTCTGTTAATAGAGCACCTCCCAGGGGCGTAAACATTCAA 497
|||||||||| || ||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 527 AATGAACCAATGGTTCAGCATTCTGTTAATAGAGCACCTCCCAGGGGTGTAAACATTCAA 586
Query 498 AATCCAGCCAACAGTACTCCAAGTTTCAGGCCTTCTGTTCAACCTTCATATCAACCGCCT 557
|||| |||||||| ||||||||| |||||||| |||||||||||||||||||||||||||
Sbjct 587 AATCAAGCCAACAATACTCCAAGCTTCAGGCCATCTGTTCAACCTTCATATCAACCGCCT 646
Query 558 GCAAGCTACAGAAATCATGGACCCATAATGAAGAACGAGGCTCCAGCTCGAGTCATCCCT 617
||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 647 GCAAGTTACAGAAATCATGGACCCATCATGAAGAACGAGGCTCCAGCTCGAGTCATCCCT 706
Query 618 ATTGCTGCTCTCAATCCATACCAAGGTCGGTGGGCTATTAAGGCTAGAGTAACTGCGAAA 677
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 707 ATTGCTGCTCTCAATCCATACCAAGGTCGATGGGCTATTAAGGCTAGAGTAACTGCGAAA 766
Query 678 GGAGATATCAGACGATACAACAATGCAAAAGGAGATGGAAAGGTTTACTCCTTTGATCTG 737
||||||||||||||||| |||||||||||||||||||||||||||| ||| |||||||||
Sbjct 767 GGAGATATCAGACGATATAACAATGCAAAAGGAGATGGAAAGGTTTTCTCGTTTGATCTG 826
Query 738 CTTGACTCTGATGGAGGGGAGATTCGGGTTACCTGCTTTAATGCTGTTGCTGACCGATTC 797
||||||| |||||||||||||||||||||||| |||||||||||| ||| |||||| |||
Sbjct 827 CTTGACTATGATGGAGGGGAGATTCGGGTTACGTGCTTTAATGCTCTTGTTGACCGTTTC 886
Query 798 TATGACGTTACTGAGGTTGGTAAGGTATATTTGATTTCAAAGGGAAGCTTGAAGCCTGCA 857
||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 887 TATGATGTTACTGAGGTTGGTAAGGTATATTTGATTTCAAAGGGAAGTTTGAAGCCTGCA 946
Query 858 CAGAAAAATTTCAACCACTTAAAGAATGAATGGGAAATTTTCTTGGAGTCAACATCGACT 917
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 947 CAGAAAAATTTCAACCACTTAAAGAATGAATGGGAAATTTTCTTGGAGTCAACATCGACT 1006
Query 918 GTGGAGCTTTGCCCTGATGAAGATGGCTCCATACCAAGGCAGCAGTTCTCTTTCCGTCCT 977
||||||||||||||||||||||||||||||||||||| |||||| ||||| ||||| ||
Sbjct 1007 GTGGAGCTTTGCCCTGATGAAGATGGCTCCATACCAAAGCAGCAATTCTCCTTCCGCCCA 1066
Query 978 ATAGGTGACATTGAGAACGCCGAGAACAATACCATACTCGATGTCATTGGGGTTGTGACT 1037
||| |||||||||||||||| ||||||||||||||||||||||||||||| || ||||||
Sbjct 1067 ATAAGTGACATTGAGAACGCTGAGAACAATACCATACTCGATGTCATTGGTGTGGTGACT 1126
Query 1038 TCTGTGAACCCCTCGGTGCCAATCTTGAGAAAGAACGGGATGGAAACCCATAGGCGAATC 1097
|||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||
Sbjct 1127 TCTGTGAACCCCTCGGTGCCAATCTTGAGAAAGAACGGGATGGAAACCCATAGGAGGATC 1186
Query 1098 CTGAATCTGAAGGATGAATCGGGAAAAGCTGTAGAGGTAACGCTATGGGGAGAATTCTGT 1157
|||||||| ||||||||||| ||||| |||||||||||||| || |||||||||||||||
Sbjct 1187 CTGAATCTAAAGGATGAATCAGGAAAGGCTGTAGAGGTAACACTTTGGGGAGAATTCTGT 1246
Query 1158 AATCGAGATGGTCGGCAACTGGAAGAGATGGTTGATTCAGCTTTTCATCCGGTTTTAGCA 1217
|| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1247 AACCGAGATGGTCGGCAACTGGAAGAGATGGTTGATTCAGCTTTTCACCCGGTTTTAGCA 1306
Query 1218 ATAAAAGCTGGAAAAGTAAGCGACTTCAGCGGGAAATCAGTGGGGACAATATCTTCAACA 1277
||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||
Sbjct 1307 ATAAAAGCTGGAAAAGTAAGCGACTTCAGTGGGAAATCAGTAGGGACAATATCTTCAACA 1366
Query 1278 CAGCTCTTCATAAATCCAGATTTCCCTGAAGCTCATAAACTACGGACCTGGTTCGATCAC 1337
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1367 CAGCTCTTCATAAATCCAGATTTCCCTGAAGCTCATAAACTACGGACCTGGTTCGATTAC 1426
Query 1338 GGGGGAAAAGACACTGCTTCCTTCTCCATCTCCAGGGACACTATGCCTGGAGGAGTTTCC 1397
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1427 GGGGGAAAAGACACTGCTTCCTTCTCCATCTCCAGGGACACTATGCCTGGAGGAGTTTCC 1486
Query 1398 AGGAACGAGATAA-GAAAAAGTGTTTCTCAGATCAAAGAGGAAGGTCTTGGAAGATCAGA 1456
||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1487 AGGAACGAGATAAGGAAAAA-TGTTTCTCAGATCAAAGAGGAAGGTCTTGGAAGATCAGA 1545
Query 1457 TAAGCCTGACTGGATCACTGTGAAAGCAACCATATCATTCATCAAAACAGATAGCTTCTG 1516
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1546 TAAGCCTGACTGGATCACTGTGAAAGCAACCATATCATTCATCAAAACAGATAGCTTCTG 1605
Query 1517 TTATACAGCTTGTCCTTTGATGATCGGAGATAAACAATGCAACAAGAAGGTGACACGGTC 1576
||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct 1606 TTATACAGCTTGTCCTTTGATGATCGGGGATAAACAATGCAACAAGAAGGTTACACGGTC 1665
Query 1577 TGGAACAAACAGGTGGCTCTGTGACCGGTGCAACCAAGAGTCTGATGAATGCGACTACAG 1636
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1666 TGGAACAAACAGGTGGCTCTGTGACCGGTGCAACCAAGAGTCTGATGAATGCGACTATAG 1725
Query 1637 ATACCTTCTTCAGGTGCAGATTCAAGACCACACTGGGTTGACTTGGATAACCGCATTCCA 1696
||||||||||||||| |||||||||||||||||||||||||||||||||||||| || ||
Sbjct 1726 ATACCTTCTTCAGGTACAGATTCAAGACCACACTGGGTTGACTTGGATAACCGCGTTTCA 1785
Query 1697 AGAAACGGGAGAAGAAATCATGGGATGTCCGGCTAAGAAGCTTTACGCATTGAAATACGA 1756
|||||| ||||||||||| |||||||||||||||||||||||||||||| ||||||||||
Sbjct 1786 AGAAACAGGAGAAGAAATAATGGGATGTCCGGCTAAGAAGCTTTACGCAATGAAATACGA 1845
Query 1757 ATTGGAGAAGGAGGAAAAGTTCGCAGAGATTGTTAGAGACAGACTGTTTCATCAATACAT 1816
|||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1846 ATTGGAGAAGGAGGAAGAGTTCGCAGAGATTGTTAGAGACAGACTGTTTCATCAGTACAT 1905
Query 1817 GTTGAAGCTAAAGATCAAAGAGGAATCGTATGGGGATGAACAAAGAGTGAAGATGACTGT 1876
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1906 GTTGAAGCTGAAGATCAAAGAGGAATCGTATGGGGATGAACAAAGAGTGAAGATGACTGT 1965
Query 1877 TGTGAAGGTGGATAAGGTGAATTATACATCAGAGAGTAAATACATGCTTGATTTGCTCGT 1936
||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1966 TGTGAAGGTTGATAAGGTGAATTATACATCCGAGAGTAAATACATGCTTGATTTGCTCGT 2025
Query 1937 AAGGTAA 1943
|||||||
Sbjct 2026 AAGGTAA 2032
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 97288656210
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5