BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg930940
Length=356
Score E
Sequences producing significant alignments: (Bits) Value
AT1G43720.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 215 3e-55
AT3G42870.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 196 9e-50
AT3G30520.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 147 9e-35
> AT1G43720.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT3G42870.1);
Has 51 Blast hits to 51 proteins in 3 species: Archae - 0;
Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 49; Viruses
- 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:16495080-16496078
FORWARD LENGTH=945
Length=945
Score = 215 bits (116), Expect = 3e-55
Identities = 200/241 (83%), Gaps = 3/241 (1%)
Strand=Plus/Plus
Query 93 GATCCAAGATGATTACGATGAATTTAAAAAGGCGGAAGAGATATTCATTGCGCTAGACCT 152
||| |||||||||||||||||||||||||||||||||| |||||| || |||||| | ||
Sbjct 388 GAT-CAAGATGATTACGATGAATTTAAAAAGGCGGAAGCGATATTTATCGCGCTAAATCT 446
Query 153 TCCTAAATATACTAGATTTTACTGGACATGCAT-AAGTACACTTAAGGAGCAAGCATTAT 211
|||||| | ||||||||| | ||| ||||||| || | |||||||||||| || ||| |
Sbjct 447 TCCTAAGCACACTAGATTTCATTGGGCATGCATTAA-TGCACTTAAGGAGCTAGTATTTT 505
Query 212 GGCGTAAGTATTTTATTGACATAGCTGAAAGCACCGATGAAAATAAGCTACAACTGCTAG 271
||||||||||||| ||||| ||| ||| ||||||||| || ||||| | |||||| |||
Sbjct 506 GGCGTAAGTATTTGATTGATATAACTGCAAGCACCGACGAGGATAAGGTCCAACTGTTAG 565
Query 272 AAATTATAACTGGTGTTTTACGGAATAACGAATATATGCGAGAACAATTAGGTTCAAACC 331
|| ||| |||||||||| ||| || ||| || || ||| | |||| |||||||||| ||
Sbjct 566 AAGCTATGACTGGTGTTTCACGTAACAACCAAGATGTGCCAAAACAGTTAGGTTCAAGCC 625
Query 332 A 332
|
Sbjct 626 A 626
> AT3G42870.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT3G30520.1);
Has 47 Blast hits to 47 proteins in 2 species: Archae - 0;
Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 47; Viruses
- 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:14949456-14951279
FORWARD LENGTH=939
Length=939
Score = 196 bits (106), Expect = 9e-50
Identities = 192/234 (82%), Gaps = 4/234 (2%)
Strand=Plus/Plus
Query 96 CCAAGATGATTACGATGAATTTAAAAAGGCGGAAGAGATATTCATTGCGCTAGACCTTCC 155
||||||||||||||||||||||||||||||||||| |||||| || | ||||| |||||
Sbjct 396 CCAAGATGATTACGATGAATTTAAAAAGGCGGAAGCGATATTTATCCCACTAGATCTTCC 455
Query 156 TAAATATACTAGATTTTACTGGACATGCAT-AAGTACACTTAAGGAGCAAGCATTAT-GG 213
|| | ||||||||||| ||| ||||||| || | ||||| |||||| || || || ||
Sbjct 456 CAAGCACACTAGATTTTATTGGGCATGCATTAA-TGCACTTGAGGAGCTAGTAT-ATTGG 513
Query 214 CGTAAGTATTTTATTGACATAGCTGAAAGCACCGATGAAAATAAGCTACAACTGCTAGAA 273
||||||||||| ||||| ||||||| ||||||||| || ||||| |||||||| |||||
Sbjct 514 CGTAAGTATTTCATTGATATAGCTGCAAGCACCGACGAGGATAAGGTACAACTGTTAGAA 573
Query 274 ATTATAACTGGTGTTTTACGGAATAACGAATATATGCGAGAACAATTAGGTTCA 327
||| |||||||||| | || ||| || || ||| | |||| |||||||||
Sbjct 574 GCTATGACTGGTGTTTCCCCCAACAACCAAGATGTGCCAAAACAGTTAGGTTCA 627
> AT3G30520.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT3G42870.1);
Has 70 Blast hits to 70 proteins in 9 species: Archae - 0;
Bacteria - 8; Metazoa - 5; Fungi - 0; Plants - 57; Viruses
- 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:12130340-12132173
FORWARD LENGTH=1194
Length=1194
Score = 147 bits (79), Expect = 9e-35
Identities = 126/149 (85%), Gaps = 2/149 (1%)
Strand=Plus/Plus
Query 96 CCAAGATGATTACGATGAATTTAAAAAGGCGGAAGAGATATTCATTGCGCTAGACCTTCC 155
||||||||||||||||||||||||||||||||||| |||||| | || ||||| |||||
Sbjct 720 CCAAGATGATTACGATGAATTTAAAAAGGCGGAAGCGATATTTACCGCCCTAGATCTTCC 779
Query 156 TAAATATACTAGATTTTACTGGACATGCAT-AAGTACACTTAAGGAGCAAGCATTATGGC 214
|| | ||||||||| | ||| ||||||| || | |||||||||||| || ||| ||||
Sbjct 780 CAAGCACACTAGATTTCATTGGGCATGCATTAA-TGCACTTAAGGAGCTAGTATTTTGGC 838
Query 215 GTAAGTATTTTATTGACATAGCTGAAAGC 243
||||||||| ||||| ||||||| ||||
Sbjct 839 CTAAGTATTTCATTGATATAGCTGCAAGC 867
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 16688892668
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5