BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg930951

Length=197
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G06983.1 | Symbols: SCRL16 | SCR-like 16 | chr2:2888951-2889...   148    1e-35


> AT2G06983.1 | Symbols: SCRL16 | SCR-like 16 | chr2:2888951-2889382 
FORWARD LENGTH=264
Length=264

 Score =  148 bits (80),  Expect = 1e-35
 Identities = 86/89 (97%), Gaps = 0/89 (0%)
 Strand=Plus/Plus

Query  89   AAACTAAGCGTTGTGATTGTCAAGACATGCTTGGGACATTTAAGGGCTGGCATTTCTGCA  148
            |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct  176  AAACTAAGCGTTGTGATTGTCAAGACATGCTTGGGACATTCAAGGGCTGGCATTTCTGCA  235

Query  149  CATGTTATAGTGGTCGTCCTGGCTGCTAA  177
            ||||||| |||||||||||||| ||||||
Sbjct  236  CATGTTACAGTGGTCGTCCTGGTTGCTAA  264


 Score =  124 bits (67),  Expect = 2e-28
 Identities = 67/67 (100%), Gaps = 0/67 (0%)
 Strand=Plus/Plus

Query  22  ATGAGATCAATCACTTGGTTTATAGTTTTCTGTGTTTTCATGTTCATCGCTTTAAACCAT  81
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1   ATGAGATCAATCACTTGGTTTATAGTTTTCTGTGTTTTCATGTTCATCGCTTTAAACCAT  60

Query  82  GTTAAAG  88
           |||||||
Sbjct  61  GTTAAAG  67



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 8752435074


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5