BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg930957
Length=594
Score E
Sequences producing significant alignments: (Bits) Value
AT3G33025.1 | Symbols: | pseudogene, hypothetical protein | ch... 438 2e-122
> AT3G33025.1 | Symbols: | pseudogene, hypothetical protein |
chr3:13571980-13573065 FORWARD LENGTH=1086
Length=1086
Score = 438 bits (237), Expect = 2e-122
Identities = 452/551 (82%), Gaps = 34/551 (6%)
Strand=Plus/Plus
Query 40 TAACTGATCTAGCACTCCGGGGTTACCGTCTTTACATGGC-ATCTAACAGTCGTTGC-CT 97
|||||||||||| |||| ||||||||||||||||||| || | | ||| |||||| | |
Sbjct 552 TAACTGATCTAGTACTCTGGGGTTACCGTCTTTACATCGCAACCAAAC-GTCGTTTCGC- 609
Query 98 TCGAGTTATAGATTTGTCTGGAAATC-AAGGTTTCGAGGATGTCACCGGGAGTAACCCAA 156
||||||||| |||||||||||| ||| |||||||||||||||||||||||||||||||||
Sbjct 610 TCGAGTTATTGATTTGTCTGGATATCAAAGGTTTCGAGGATGTCACCGGGAGTAACCCAA 669
Query 157 AGCCAATGTTATCTCCTCTCGGAAAACATAATTATTTTAGCATTACCGTTACAACAGCAG 216
||| |||||| || ||||||||| ||||||||| |||||||||| | | || || | |||
Sbjct 670 AGCAAATGTTTTCCCCTCTCGGAGAACATAATTCTTTTAGCATTGCGGATATAATATCAG 729
Query 217 GAGAGGTTTTGTTGGTCGAGAGCACAACCTTTGAAAACCAGAGGACCTTCCGTGTCTACA 276
|||||||||||||||| ||| ||| ||||||||||||| |||||| ||| || ||| ||
Sbjct 730 GAGAGGTTTTGTTGGTTGAGGGCATAACCTTTGAAAACTAGAGGATCTTTTGTCTCTTCA 789
Query 277 GGAAGGATCCTAATG-CT--GAC--CC-AGATG---ACCAA-ATCCC-----AATCTTTT 321
||||||||||| || ||| || | ||| |||| | ||| || ||| |
Sbjct 790 --AAGGATCCTAACAACTTAGACGACCCACATGTCTACCACCACCCCCCCCCAAGCTTCT 847
Query 322 TGAGTTGGATTCTCTTGGTGATGAGGCCCTGCTTCTCGACTTGGGTATCACTGTGCATGC 381
|||| | ||||||||||||||||| ||||| ||||| ||||||||||| || ||| |||
Sbjct 848 TGAGGTAGATTCTCTTGGTGATGAAGCCCTTCTTCTTGACTTGGGTATTACCATGCCTGC 907
Query 382 TTACCATACCCTTGGTATCAAACCAAACTCTATCTATTTCACCCGTCATGACCGTTAACG 441
| |||||||||| |||||||| ||||||||||||||||| || |||||||||||| |
Sbjct 908 TAACCATACCCTAGGTATCAAGCCAAACTCTATCTATTTTACTCGTCATGACCGT----G 963
Query 442 TTCCCGTCTCCGTCTCCGCATCCCTTTTGATCTGGATATTTGTGTGTTCAGTCTTGCAAC 501
||||| | | | ||||||||||||||||| || | |||||||| |||||||||
Sbjct 964 --CCCGT-T---T-TAAA-ATCCCTTTTGATCTGGACATATATGTGTTCAATCTTGCAAC 1015
Query 502 CAAAACCCTCATTCGCTTCCCTCAACTCGCCAACTTGTATCCCAAGGATGCTCGATGGTT 561
||| ||||||| ||||||||||||||||||||| || ||| ||||||||||| ||||||
Sbjct 1016 CAAGACCCTCAAACGCTTCCCTCAACTCGCCAACATGAATCTCAAGGATGCTCAATGGTT 1075
Query 562 TCTCCCTATGA 572
|| ||| ||||
Sbjct 1076 TCACCCCATGA 1086
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 28583229643
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5