BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg930958
Length=959
Score E
Sequences producing significant alignments: (Bits) Value
AT3G44800.1 | Symbols: | Meprin and TRAF (MATH) homology domai... 719 0.0
AT3G44790.1 | Symbols: | TRAF-like family protein | chr3:16328... 651 0.0
AT3G44805.1 | Symbols: | TRAF-like superfamily protein | chr3:... 416 2e-115
AT3G58220.2 | Symbols: | TRAF-like family protein | chr3:21564... 252 5e-66
AT3G58370.1 | Symbols: | TRAF-like family protein | chr3:21595... 159 3e-38
AT3G58340.1 | Symbols: | TRAF-like family protein | chr3:21589... 154 2e-36
AT3G58380.1 | Symbols: | TRAF-like family protein | chr3:21597... 132 7e-30
AT2G05410.1 | Symbols: | TRAF-like family protein | chr2:19769... 121 2e-26
AT1G31370.1 | Symbols: | Ubiquitin-specific protease family C1... 115 7e-25
AT1G31400.1 | Symbols: | TRAF-like family protein | chr1:11245... 91.6 1e-17
AT1G31380.1 | Symbols: | TRAF-like family protein | chr1:11240... 84.2 2e-15
AT1G31390.1 | Symbols: | TRAF-like family protein | chr1:11243... 76.8 3e-13
> AT3G44800.1 | Symbols: | Meprin and TRAF (MATH) homology domain-containing
protein | chr3:16343333-16346027 FORWARD LENGTH=1695
Length=1695
Score = 719 bits (389), Expect = 0.0
Identities = 568/649 (88%), Gaps = 34/649 (5%)
Strand=Plus/Plus
Query 262 GGTGGATTTCTTGTGAACAATGAAGTCAAGATTGTTGTGGAGGTAGATGTTCTTCAAGTT 321
||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||
Sbjct 343 GGTGGATTTCTTGTGAACAATGAAGTCAAGATTGTTGCGGAGGTAGATGTTCTTGAAGTT 402
Query 322 ATTGGCAAATTAGATGTTTCTGAGGAATCTCTAGAGGTAAACCAACCTCTGAATAGGATA 381
||||||||||||||||||||| ||||||||| |||||||| |||||| ||| |||||
Sbjct 403 ATTGGCAAATTAGATGTTTCTAAGGAATCTCAAGAGGTAATTAAACCTCGGAAAAGGATG 462
Query 382 AAGCTAAATGGTGA---TGGT---GTG----G-----T---------AACTTCATCAGTT 417
| |||| ||||||| |||| ||| | | ||||||||||||
Sbjct 463 AGGCTATATGGTGATGGTGGTGCGGTGTCTAGTCATTTGCACAAGGAAACTTCATCAGTA 522
Query 418 GATGTCAATGGGTTTCAAGTTCTTCCTTCACAGGCGGAATCTGTGAAACGTATATTCGAA 477
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 523 GATGTCAATGGGTTTCAAGTTCTTCCTTCACAGGCGGAATCTGTGAAGCGTATATTCGAA 582
Query 478 AAACACCCAGACATGGCACTAAAATTCCGAGCAAAGAACCAACATTTGAAGACATCATGC 537
| ||||||| |||||||| || | |||||||||||||||||||| |||| | |||||||
Sbjct 583 AGACACCCATACATGGCATTAGAGTTCCGAGCAAAGAACCAACAGTTGAGGGCATCATGT 642
Query 538 ATAAATGTCCTCCTCAGCTTAATCAAGACGTTGTGCCAGTCACTGCAAGACCTTTCCATT 597
|||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||
Sbjct 643 ATAAATGTCCTCCTCAGCCTAATCAAGACGTTGTGCCAGTCACTGCAAGATATTTCCATT 702
Query 598 GATGACCTGGGCCAAGCAGAGCAAGCACTAACATATC-TG-AATAATT-TGGGCTTTAAG 654
|||||||| |||||| ||||||||| |||||||| || || || |||| ||| ||||||
Sbjct 703 GATGACCTAGGCCAAACAGAGCAAGTACTAACAT-TCCTGCAA-AATTCTGGA-TTTAAG 759
Query 655 GTGGATTGGTTGGAGTGTAAACTGGAGGAAGTAAAGGCAAAA-AAGATGGAAGAGCAGAT 713
||||||||| ||||| ||||||||||||||||||||| |||| ||||| ||||||| ||
Sbjct 760 GTGGATTGGCTGGAGCGTAAACTGGAGGAAGTAAAGG-AAAAGAAGATCCAAGAGCACAT 818
Query 714 TGGTAAGACTCGGATGCAAGAATTAGAGAAAGACCTGAAGCTCTTTAAGAAGAAGTGCTC 773
||||||| |||||||||||| ||||||| ||||||||||| |||| ||||||||||||||
Sbjct 819 TGGTAAGTCTCGGATGCAAGGATTAGAGGAAGACCTGAAGGTCTTCAAGAAGAAGTGCTC 878
Query 774 TGACATAGAAGCTTTGCTGGAGAAAGAGAAGGAAGAACTCAAGG-ACTTGAAGCAAAAAT 832
||||||||||||| | |||||||||||||||||||||||||||| | ||||||||||| |
Sbjct 879 TGACATAGAAGCTCTACTGGAGAAAGAGAAGGAAGAACTCAAGGGA-TTGAAGCAAAAGT 937
Query 833 GCTCAGACACAGAAGCTCTGCTGGAAAAAGAGAAGACAAAGGTGTTGGC 881
||||||||| ||||||||||||||| ||||||||| ||||||||||||
Sbjct 938 GCTCAGACATAGAAGCTCTGCTGGAGAAAGAGAAGGGAAAGGTGTTGGC 986
Score = 128 bits (69), Expect = 9e-29
Identities = 77/81 (95%), Gaps = 0/81 (0%)
Strand=Plus/Plus
Query 801 GAAGGAAGAACTCAAGGACTTGAAGCAAAAATGCTCAGACACAGAAGCTCTGCTGGAAAA 860
|||||||||||||||||||||||||||||| ||||| ||||||||||||||||| || ||
Sbjct 1569 GAAGGAAGAACTCAAGGACTTGAAGCAAAAGTGCTCGGACACAGAAGCTCTGCTCGAGAA 1628
Query 861 AGAGAAGACAAAGGTGTTGGC 881
|||||||||||||||||||||
Sbjct 1629 AGAGAAGACAAAGGTGTTGGC 1649
> AT3G44790.1 | Symbols: | TRAF-like family protein | chr3:16328792-16330265
FORWARD LENGTH=975
Length=975
Score = 651 bits (352), Expect = 0.0
Identities = 493/560 (88%), Gaps = 14/560 (3%)
Strand=Plus/Plus
Query 253 CGACGAGAAGGTGGATTTCTTGTGAACAATGAAGTCAAGATTGTTGTGGAGGTAGATGTT 312
||| || |||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 323 CGAAGA-AAGGTGGATTTCTTGTGAACAATGAAGTCAAGATTGTTGTGGAGGTTGATGTT 381
Query 313 CTTCAAGTTATTGGCAAATTAGATGTTTCTGAGGAATCTCTAGAGGTAAAC-CAACCTCT 371
||||||||||||||||||||||||||||| |||| ||||| ||| |||| | ||||||||
Sbjct 382 CTTCAAGTTATTGGCAAATTAGATGTTTCAGAGGGATCTCAAGAAGTAA-CTCAACCTCT 440
Query 372 GAATAGGATAAAGCTAAATGGTGATGGTGTG---GTAACTTCAT--CAGTTGATGTCAAT 426
||| ||||||| |||||| | ||||||||| |||| || || |||||||||||
Sbjct 441 GAAAAGGATAAGGCTAAACGATGATGGTGTTTCCGTAAAA-CAAAGCA-TTGATGTCAAT 498
Query 427 GGGTTTCAAGTTCTTCCTTCACAGGCGGAATCTGTGAAACGTATATTCGAAAAACACCCA 486
|||||||| |||||||||||||||| |||||| ||||||||||| || |||| |||||||
Sbjct 499 GGGTTTCAGGTTCTTCCTTCACAGGTGGAATCGGTGAAACGTATCTTTGAAAGACACCCA 558
Query 487 GACATGGCACTAAAATTCCGAGCAAAGAACCAACATTTGAAGACATCATGCATAAATGTC 546
||||||||||| | ||||||||||||||||||||| ||| ||||||||| || ||||||
Sbjct 559 AACATGGCACTAGAGTTCCGAGCAAAGAACCAACATGTGAGGACATCATGTATGAATGTC 618
Query 547 CTCCTCAGCTTAATCAAGACGTTGTGCCAGTCACTGCAAGACCTTTCCATTGATGACCTG 606
||||||||| ||||| | || |||||||||||||||||||| |||||||||||||||||
Sbjct 619 CTCCTCAGCCTAATCGATACACTGTGCCAGTCACTGCAAGACATTTCCATTGATGACCTG 678
Query 607 GGCCAAGCAGAGCAAGCACTAACATATCTGAATA-ATTTGGGCTTTAAGGTGGATTGGTT 665
||||| |||||| ||||||||| ||| ||||| | ||| || ||||||||||||||||||
Sbjct 679 GGCCAGGCAGAGAAAGCACTAAGATACCTGAA-AGATTCGGACTTTAAGGTGGATTGGTT 737
Query 666 GGAGTGTAAACTGGAGGAAGTAAAGGCAAAA-AAGATGGAAGAGCAGATTGGTAAGACTC 724
||| ||||| |||||||||| |||| |||| |||||||||||||||||||||||| |||
Sbjct 738 AGAGCGTAAATTGGAGGAAGTGAAGG-AAAAGAAGATGGAAGAGCAGATTGGTAAGTCTC 796
Query 725 GGATGCAAGAATTAGAGAAAGACCTGAAGCTCTTTAAGAAGAAGTGCTCTGACATAGAAG 784
||||||||||| ||||| |||| |||||| |||| ||| |||||||||||||||||||||
Sbjct 797 GGATGCAAGAACTAGAGGAAGAGCTGAAGATCTTCAAGCAGAAGTGCTCTGACATAGAAG 856
Query 785 CTTTGCTGGAGAAAGAGAAG 804
|| |||||||||||||||
Sbjct 857 CTCAACTGGAGAAAGAGAAG 876
Score = 69.4 bits (37), Expect = 6e-11
Identities = 39/40 (98%), Gaps = 0/40 (0%)
Strand=Plus/Plus
Query 766 AAGTGCTCTGACATAGAAGCTTTGCTGGAGAAAGAGAAGG 805
|||||||| |||||||||||||||||||||||||||||||
Sbjct 880 AAGTGCTCAGACATAGAAGCTTTGCTGGAGAAAGAGAAGG 919
> AT3G44805.1 | Symbols: | TRAF-like superfamily protein | chr3:16350395-16351437
FORWARD LENGTH=747
Length=747
Score = 416 bits (225), Expect = 2e-115
Identities = 306/345 (89%), Gaps = 6/345 (2%)
Strand=Plus/Plus
Query 405 AACTTCATCAGTTGATGTCAATGGGTTTCAAGTTCTTCCTTCACAGGCGGAATCTGTGAA 464
|||||||||||| |||||||||||||||| ||||||||||||||| | |||||||| |||
Sbjct 141 AACTTCATCAGTCGATGTCAATGGGTTTCTAGTTCTTCCTTCACAAGTGGAATCTGCGAA 200
Query 465 ACGTATATTCGAAAAACACCCAGACATGGCACTAAAATTCCGAGCAAAGAACCAACATTT 524
|| ||||||||||| |||| ||||||||||||| | |||||||||||||||||| || |
Sbjct 201 ACTTATATTCGAAAGACACTCAGACATGGCACTGGAGTTCCGAGCAAAGAACCAATATGT 260
Query 525 GAAGACATCATGCATAAATGTCCTCCTCAGCTTAATCAAGACGTTGTGCCAGTCACTGCA 584
|| ||||||||| || ||||| ||||||||| ||||| | || ||||||||||||||||
Sbjct 261 GAGGACATCATGTATGAATGTACTCCTCAGCCTAATCGATACACTGTGCCAGTCACTGCA 320
Query 585 AGACCTTTCCATTGATGACCTGGGCCAAGCAGAGCA-AGCACTAACATATCTGAATA-AT 642
||| |||||||||||||||| |||||||||||| | |||||||||||| ||||| | ||
Sbjct 321 AGATTTTTCCATTGATGACCTCGGCCAAGCAGAG-AGAGCACTAACATACCTGAA-AGAT 378
Query 643 TTGGGCTTTAAGGTGGATTGGTTGGAGTGTAAACTGGAGGAAGTAAAGGCAAAA-AAGAT 701
| | |||||||||||||||||||||| |||||||||| |||||||||| |||| |||||
Sbjct 379 TCAGACTTTAAGGTGGATTGGTTGGAGCGTAAACTGGAAGAAGTAAAGG-AAAAGAAGAT 437
Query 702 GGAAGAGCAGATTGGTAAGACTCGGATGCAAGAATTAGAGAAAGA 746
||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 438 AGAAGAGCAGATTGGTAAGACTCGGATGCAAGAATTAGAGGAAGA 482
Score = 139 bits (75), Expect = 4e-32
Identities = 83/87 (95%), Gaps = 0/87 (0%)
Strand=Plus/Plus
Query 258 AGAAGGTGGATTTCTTGTGAACAATGAAGTCAAGATTGTTGTGGAGGTAGATGTTCTTCA 317
||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||
Sbjct 636 AGAAGGTGGATTTCTTGTGAACAATGAAGTCAAGATTATTGCAGAGGTAGATGTTCTTCA 695
Query 318 AGTTATTGGCAAATTAGATGTTTCTGA 344
||||||||||||||||||||||||||
Sbjct 696 GGTTATTGGCAAATTAGATGTTTCTGA 722
> AT3G58220.2 | Symbols: | TRAF-like family protein | chr3:21564450-21566482
REVERSE LENGTH=1636
Length=1636
Score = 252 bits (136), Expect = 5e-66
Identities = 314/398 (79%), Gaps = 20/398 (5%)
Strand=Plus/Plus
Query 418 GATGTCAATGGGTTTCAAGTTCTTCCTTCACAGGCGGA-ATCT-GTGAAACGTATATTCG 475
||| |||||||||||||||||||||||||||||| | | | || |||| ||||| ||
Sbjct 972 GATATCAATGGGTTTCAAGTTCTTCCTTCACAGGTG-ACA-CTTGTGAGCCGTATTTTAA 1029
Query 476 AAAAACACCCAGACATGGCACTAAAATTCCGA-GCAAAGAACCAACATTTGAAGACATCA 534
||||| |||||||||| ||| || |||| | |||||||||| |||| ||| |||| ||
Sbjct 1030 AAAAATACCCAGACATTGCATTAGGATTCA-ATGCAAAGAACCGACATCTGAGGACAGCA 1088
Query 535 TGCATAAATGTCCTCCTCAGCTTAATCAAGACGTTGTGCCAGTCACTGCAAGACCTTTCC 594
||||| ||||||||| ||||| ||||| |||| |||||||||||| || || || ||
Sbjct 1089 TGCATGAATGTCCTCATCAGCCTAATCGAGACACTGTGCCAGTCACCACAGGAGCTCTCA 1148
Query 595 -ATTGATGACCTGGGCCAAGCAGAGCAA-GCACTAACATATC-TG-AATAATTTGGGCTT 650
| || || ||| ||||||| ||| |||||| ||| | || || | | |||||
Sbjct 1149 GAC-GAAGATATGGATGAAGCAGA-CAATGCACTAGTATA-CGTGCAAGA-TGCAGGCTT 1204
Query 651 TAAGGTGGATTGGTTGGAGT-GTAAACTGGAGGAAGTAAAGGCAAA-AAAGATGGAAGAG 708
|||||||||||||||||| | || ||| |||||||||| | ||| |||| ||| ||||
Sbjct 1205 TAAGGTGGATTGGTTGGACAAG-AAGCTGAAGGAAGTAAAAGAAAAGAAAG-TGGTAGAG 1262
Query 709 CAGATTGGTAAGACTCGGATGCAAGAATTAGAGAAAGACCTGAAGCTCTTTAAGAAGAAG 768
|||| ||||||||| ||||| |||||||||||| | || ||||| |||||| |||||
Sbjct 1263 CAGACTGGTAAGACCCGGATTCAAGAATTAGAGGAGGAATTGAAGGAATTTAAGCAGAAG 1322
Query 769 TGCTCT-GACATAGAAGCTTTGCTGGAGAAAGAGAAGG 805
|||| | |||| |||||| ||||||| ||||||||||
Sbjct 1323 TGCT-TAGACAGGGAAGCTCTGCTGGAAAAAGAGAAGG 1359
> AT3G58370.1 | Symbols: | TRAF-like family protein | chr3:21595774-21596538
REVERSE LENGTH=660
Length=660
Score = 159 bits (86), Expect = 3e-38
Identities = 253/330 (77%), Gaps = 26/330 (8%)
Strand=Plus/Plus
Query 416 TTGATGTCAATGGGTTTCAAGTTCTTCCTTCACAGGCGGAATCTGTGAAACGTATATTCG 475
|||||||||||||||||||||||||||||||||||| ||||||||||| ||||||| |
Sbjct 221 TTGATGTCAATGGGTTTCAAGTTCTTCCTTCACAGGTAGAATCTGTGAAGTGTATATTTG 280
Query 476 AAAAACACCCAGACATGGCA-CTAAAATTCCGAGCAAAGAACCAACATTTGAAGACATCA 534
||| ||| |||||| | ||| | ||||||||| ||||||| | || |||||| || ||
Sbjct 281 AAAGACATCCAGACTTTGCATC-AAAATTCCGTCCAAAGAATCGGCACTTGAAGTCAACA 339
Query 535 TGCATAAATGTCCTCCTCAG--CTTAATCAAGACGTTGTGCCAGTCAC-TGCAAGACCTT 591
| ||| | ||||||||| || || ||| |||||||||||||||| || || | || ||
Sbjct 340 TACATGACTGTCCTCCT-AGGACT-AATTAAGACGTTGTGCCAGTTACCTG-AGGAGCTC 396
Query 592 TCC-ATTGATGACCTGGGCCAAGCAGA-GCAAGCACTAACATATC-TG-AATAATT-TGG 646
| | ||||| |||| | ||||| | ||| | |||| | || || ||| |||
Sbjct 397 ACTGAC-GATGATCTGGACGAAGCATCCGTT-GCAGTGTCATA-CGTGGAA-AATGGTGG 452
Query 647 GCTTTAAGGT-GGATTGGTTGGAGT-GTAAACTGGAGGAAGTAAAGGCAAAAAAGATGGA 704
||| ||| | ||||||||||||| | || || | |||||| |||||||| |||| | |
Sbjct 453 -CTT-AAGATTGGATTGGTTGGAGAAG-AAGCTTGCGGAAGTTAAGGCAAAGAAGAAGAA 509
Query 705 AG-AGCAGATTGGTAAGACTCGGA-TGCAA 732
|| || ||| |||||| |||| | |||||
Sbjct 510 AGTAG-AGACGGGTAAGGCTCG-ACTGCAA 537
> AT3G58340.1 | Symbols: | TRAF-like family protein | chr3:21589071-21590401
REVERSE LENGTH=978
Length=978
Score = 154 bits (83), Expect = 2e-36
Identities = 202/259 (78%), Gaps = 10/259 (4%)
Strand=Plus/Plus
Query 416 TTGATGTCAATGGGTTTCAAGTTCTTCCTTCACAGGCGGAATCTGTGAAACGTATATTCG 475
||||||| |||||||||||||||||||||||||||| |||||||||| |||||| ||
Sbjct 560 TTGATGTTAATGGGTTTCAAGTTCTTCCTTCACAGGTAGAATCTGTGAGACGTATTTTTA 619
Query 476 AAAAACACCCAGACATGGCACTAAAATTCCGAGCAAAGAACCAACATTTGAAGACATCAT 535
||||||| |||||||| ||| || ||||| || ||||||||||||| ||| || | |||
Sbjct 620 AAAAACATCCAGACATTGCAGTAGGATTCCAAGTAAAGAACCAACATCTGAGGAAAACAT 679
Query 536 GCATAAATGTCCTCCTCAGCTTAATCAAGACGTTGTGCCAGTCACTGCAAGACCTTTCCA 595
||| ||| |||| ||| | |||| ||||| ||||||| || || || || || || |
Sbjct 680 TCATGAATTTCCTTGTCAACGTAATTGAGACGATGTGCCAATCTCTCCAGGAGCTCTCAA 739
Query 596 TTGATGACCT-G-GGCCAAGCAGAGCAA-GCACTAACATATCT-GAATA-ATTTGGGCTT 650
||| || || | || ||| ||| || || | ||||| || ||| | || ||| ||
Sbjct 740 ATGAAGATCTTGTGG--AAGTAGA-CATTGCGTTGACATA-CTTGAA-AGATGCGGGATT 794
Query 651 TAAGGTGGATTGGTTGGAG 669
||||||||||||||| |||
Sbjct 795 TAAGGTGGATTGGTTAGAG 813
> AT3G58380.1 | Symbols: | TRAF-like family protein | chr3:21597799-21599568
REVERSE LENGTH=1236
Length=1236
Score = 132 bits (71), Expect = 7e-30
Identities = 261/349 (75%), Gaps = 27/349 (8%)
Strand=Plus/Plus
Query 411 ATCAGTTGATGTCAATGGGTTTCAAGTTCTTCCTTCACAGGCGGAATCTGTGAAACGTAT 470
|||| |||||||||||||||||||||||||||||||||||| ||||||||||| |||||
Sbjct 618 ATCA-TTGATGTCAATGGGTTTCAAGTTCTTCCTTCACAGGTAGAATCTGTGAAGCGTAT 676
Query 471 ATTCGAAAAACACCCAGACATGGCACTAA-AATTCCGAGCAAAGAACCAACAT-T-TGAA 527
||| |||| | ||||| |||| ||| | | || ||| ||| ||| | ||| | ||||
Sbjct 677 ATTTGAAATATACCCAAACATTGCA-TCAGAAGTCCCTTCAATGAAAC--CATGTCTGAA 733
Query 528 GACATCATGCATAAATGTCCTCCTCAGCTTAATC-AAGACGTTGTGCCAG-T-CACTGCA 584
||||| || ||| ||||| |||||| | |||| || ||| ||||||| | | ||||
Sbjct 734 GACATTATACATGAATGTACTCCTCGGAATAATTGAA-ACGCTGTGCCAACTGC-CTGCG 791
Query 585 AGACCTTTCC-ATTGATGACCTGGGCCAAGCAGAGCAA-GCACTAACATATC-TGA-ATA 640
|| || || || ||| |||| ||||| || ||| | || || || | |
Sbjct 792 -GAGCTCTCTGATAC-TGATCTGGATGAAGCATC-CATTGCAGTTTTAT-TCGTGTCACA 847
Query 641 ATTTGGGCTTTAAGGTGGATTGGTTGGAGT-GTAAACTGGAGGAAGTAAAGGCAAAA-AA 698
| ||| |||||| ||||||||||||||| | || || |||||||||||| |||| ||
Sbjct 848 AGGTGG-CTTTAAAGTGGATTGGTTGGAGAAG-AAGCTCAAGGAAGTAAAGG-AAAAGAA 904
Query 699 GATGGAA-GAGCAGATTGGTAAGACTCGGATGCAAGAATTAGAGAAAGA 746
|| | || | | | | ||||||| ||||| ||||| || ||||| ||||
Sbjct 905 GAAG-AATGTGGATAATGGTAAGGCTCGGCTGCAACAAATAGAGGAAGA 952
> AT2G05410.1 | Symbols: | TRAF-like family protein | chr2:1976918-1978553
FORWARD LENGTH=1082
Length=1082
Score = 121 bits (65), Expect = 2e-26
Identities = 227/302 (75%), Gaps = 24/302 (8%)
Strand=Plus/Plus
Query 418 GATGTCAATGGGTTTCAAGTTCTTCCTTCACAGGCGGAATCTGTGAAACGTATATTCGAA 477
|||||||||||||||||||||||||||||||||| || |||||||| ||| | || |||
Sbjct 633 GATGTCAATGGGTTTCAAGTTCTTCCTTCACAGGTAGATTCTGTGAAGCGTTTGTTTGAA 692
Query 478 AAACACCCAGACATGGCA-CTAAAATTCCGAGC--AAAGAA-CCAACATTTGAAGACAT- 532
||| ||| ||| || | | | |||||| || | ||| || ||| |||||||||| |
Sbjct 693 AAAAACCTAGATATTGTATC-AAAATTTCGT-CTTAAA-AATCCAT-ATTTGAAGAC-TG 747
Query 533 CATGCATAAATGTCCTCCTCAGCTTAATC-AAGACGTTGTGCCAGTCAC-TGCAAGACCT 590
| ||||| ||| ||||||| || |||| | || ||| |||| || || | | ||||| ||
Sbjct 748 CGTGCATGAATCTCCTCCTGAGTTTAACCGAA-ACGCTGTGTCAATCGCCT-CAAGAACT 805
Query 591 TTCCATTGATGACCTGGGCCAA-GCAGA-GCAAGCACTAACATATCTGA-ATAATTTGGG 647
|||| ||||| || | | |||| | ||||| ||||| ||| | || |||
Sbjct 806 CTCCAATGATGGTCTCT-CTGATGCAGGTGTT-GCACTGGCATATTTGATAGAAACAGGG 863
Query 648 CTTTAAGGTGGATTGGTTGGAGT-GTAAACTGGAGGAAGTAAAGGCAAAA-AAGATGGAA 705
||| ||| |||||||||||||| | ||||| || ||| |||||| |||| |||| | ||
Sbjct 864 CTT-AAGTTGGATTGGTTGGAGAAG-AAACTTGATGAATTAAAGG-AAAAGAAGAAGAAA 920
Query 706 GA 707
||
Sbjct 921 GA 922
> AT1G31370.1 | Symbols: | Ubiquitin-specific protease family
C19-related protein | chr1:11238298-11239363 REVERSE LENGTH=582
Length=582
Score = 115 bits (62), Expect = 7e-25
Identities = 118/144 (82%), Gaps = 8/144 (6%)
Strand=Plus/Plus
Query 418 GATGTCAATGGGTTTCAAGTTCTTCCTTCACAGGCGGAATCTGTGAA-ACGTATATTCGA 476
|||||||||||||||||||||||||||||||||| ||||||||||| | || | || ||
Sbjct 331 GATGTCAATGGGTTTCAAGTTCTTCCTTCACAGGTAGAATCTGTGAAGA-GTTTGTTTGA 389
Query 477 AAAACACCCAGACATGGCA-CTAAAATTCCGAGCAAAGAACCAACATTTGAAGA-CATCA 534
||| ||||||||||| ||| | ||| ||||| ||||||||| |||| ||| || || ||
Sbjct 390 AAAGCACCCAGACATTGCATCGAAA-TTCCGTCCAAAGAACCCACATCTGA-GAACAACA 447
Query 535 TGCATAAAT-GTCCTCCTCAGCTT 557
| | | ||| ||| | || |||||
Sbjct 448 TCCTTGAATAGTC-TACTAAGCTT 470
> AT1G31400.1 | Symbols: | TRAF-like family protein | chr1:11245225-11246481
REVERSE LENGTH=837
Length=837
Score = 91.6 bits (49), Expect = 1e-17
Identities = 78/91 (86%), Gaps = 6/91 (7%)
Strand=Plus/Plus
Query 419 ATGTCAATGGGTTTCAAGTTCTTCCTTCACAGGCGGAATCTGTGAA-ACGTATATTCGAA 477
||||||||||||||||||||||||||||||||| ||||||||||| | | | ||| ||
Sbjct 461 ATGTCAATGGGTTTCAAGTTCTTCCTTCACAGGTAGAATCTGTGAACAA-TCTCTTC-AA 518
Query 478 AAA-CACCCAGACATGGCACTAAAA-TTCCG 506
||| ||||||||||| ||| | ||| |||||
Sbjct 519 AAATCACCCAGACATTGCA-TCAAACTTCCG 548
> AT1G31380.1 | Symbols: | TRAF-like family protein | chr1:11240451-11241099
REVERSE LENGTH=528
Length=528
Score = 84.2 bits (45), Expect = 2e-15
Identities = 90/111 (81%), Gaps = 6/111 (5%)
Strand=Plus/Plus
Query 419 ATGTCAATGGGTTTCAAGTTCTTCCTTCACAGGCGGAATCTGTGAA-ACGTATATTCGAA 477
||||||||||||||||||||||||||||||||| |||| |||||| | || | || |||
Sbjct 146 ATGTCAATGGGTTTCAAGTTCTTCCTTCACAGGTAGAATTTGTGAAGA-GTCTGTTTGAA 204
Query 478 AAACACCCAGACATGGCA-CTAAAATTCCGAGCA-AAGAACCAACATTTGA 526
|| |||||||| || | | | |||| ||| | | ||||||| |||| |||
Sbjct 205 AAGCACCCAGATATCGAATC-AAAACTCC-ATCTGAAGAACCCACATATGA 253
> AT1G31390.1 | Symbols: | TRAF-like family protein | chr1:11243191-11244392
REVERSE LENGTH=807
Length=807
Score = 76.8 bits (41), Expect = 3e-13
Identities = 64/75 (85%), Gaps = 2/75 (3%)
Strand=Plus/Plus
Query 418 GATGTCAATGGGTTTCAAGTTCTTCCTTCACAGGCGGAATCTGTGAA-ACGTATATTCGA 476
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Sbjct 469 GATATCAATGGGTTTCAAGTTCTTCCTTCACAGGTAGAATCTGTGAACAA-TCTCTTTGA 527
Query 477 AAAACACCCAGACAT 491
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Sbjct 528 GAAGCACCCAGACAT 542
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46918693298
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5