BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg930960
Length=1138
Score E
Sequences producing significant alignments: (Bits) Value
AT3G33025.1 | Symbols: | pseudogene, hypothetical protein | ch... 771 0.0
> AT3G33025.1 | Symbols: | pseudogene, hypothetical protein |
chr3:13571980-13573065 FORWARD LENGTH=1086
Length=1086
Score = 771 bits (417), Expect = 0.0
Identities = 742/891 (83%), Gaps = 53/891 (6%)
Strand=Plus/Plus
Query 286 CAAACTCTGGTAAATGGTTTCTGATGGTAGATTCTGGATGCAATTT-GTATATTATGGAT 344
||||||| | |||||||| ||| ||| || |||||||||||||||| | |||||| |||
Sbjct 198 CAAACTCAGATAAATGGTGTCTAATGTTATATTCTGGATGCAATTTAG-CTATTATAGAT 256
Query 345 GTGTTTAGCGA-GA-A-CAGGATCGATCTTCCGCCTCTAGAGTCGCTCCTA-CAACTTGC 400
||||||||| | || | |||||| || ||| ||||||||||||||||| | | | | |
Sbjct 257 GTGTTTAGCCAGGATAGGAGGATCAATTTTCTGCCTCTAGAGTCGCTCCAATC-AGATAC 315
Query 401 CTATGCTCTCAAGTC-TGTGAG-AGATAAGCAATGTAATAATTTTGGATTAGCTAGTGGC 458
||| |||||||| | |||| | ||||||| || || | ||||| |||| ||||||||
Sbjct 316 ATATACTCTCAAG-CGTGTG-GTAGATAAGGAA--TACT-GTTTTGAATTACCTAGTGGC 370
Query 459 TG-TTATCAG-AAAGAGATAGC-CCG-TAATCTGAGGGGCCGTTTGTGGGTAGACGAGAA 514
| |||| | || |||| | | ||| | ||||||| |||||||||||||||||| ||||
Sbjct 371 -GATTAT-TGCAACGAGA-A-CGCCGATGATCTGAGAGGCCGTTTGTGGGTAGACAAGAA 426
Query 515 GACGGGAGAGTTCGTTGTAGTGTGGTTCTTTGACCCTGATATTTATTTATTCTATTGCAA 574
||||||||||||||||||||||||||||||| ||||| ||| |||||||||||||||||
Sbjct 427 GACGGGAGAGTTCGTTGTAGTGTGGTTCTTTAACCCTTATACCTATTTATTCTATTGCAA 486
Query 575 GAAGGGGGATAATCATTACACTATCATTTCGTTGTATCACGAAGTCCCCAA-GTTATTAA 633
||||||||||| |||| ||||| ||||| | |||| | || | |||||||| ||| |||
Sbjct 487 GAAGGGGGATACTCATAACACTGTCATTCCCTTGTCTGACCAGGTCCCCAAGGTT-GTAA 545
Query 634 AAGGCTTAAATGATCTAGTACTCAGGGGTTACCGTCTTTATATAGCATCTAAACGTGGTT 693
| ||||||| ||||||||||||| |||||||||||||||| || ||| | |||||| |||
Sbjct 546 ATGGCTTAACTGATCTAGTACTCTGGGGTTACCGTCTTTACATCGCAACCAAACGTCGTT 605
Query 694 TCGTTCGAGTTATAGATTTGTCTGGACAAC-AAGATTTCGAGGATGTCACCGGGAGTAAC 752
||| ||||||||| |||||||||||| | | ||| |||||||||||||||||||||||||
Sbjct 606 TCGCTCGAGTTATTGATTTGTCTGGATATCAAAGGTTTCGAGGATGTCACCGGGAGTAAC 665
Query 753 CCAAAGCAAATGTTTTCTCCTCTCGGGGAACATAATTCTTTTAGCGTTGCCGTTACAACA 812
||||||||||||||||| |||||||| |||||||||||||||||| |||| | || || |
Sbjct 666 CCAAAGCAAATGTTTTCCCCTCTCGGAGAACATAATTCTTTTAGCATTGCGGATATAATA 725
Query 813 ACAGGAGAGGTTTTGTTGGTCGAGAGCAAAACCTTCGAAGACCAGAGGACCTTCCGCCTC 872
||||||||||||||||||| ||| ||| |||||| ||| || |||||| ||| | |||
Sbjct 726 TCAGGAGAGGTTTTGTTGGTTGAGGGCATAACCTTTGAAAACTAGAGGATCTTTTGTCTC 785
Query 873 TTTAAGAAGGATCCTAACAA-T--G-CAGACCCACTTGTC--C-AC-AGCCCC----AAG 920
|| || | |||||||||||| | | | ||||||| |||| | || | |||| |||
Sbjct 786 TTCAA-A-GGATCCTAACAACTTAGAC-GACCCACATGTCTACCACCACCCCCCCCCAAG 842
Query 921 CTTCTTGAGGTAGATTCTCTTGGTGATGAAGCCCTGCTTCTTGACTTGGGTATTACGGTA 980
||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
Sbjct 843 CTTCTTGAGGTAGATTCTCTTGGTGATGAAGCCCTTCTTCTTGACTTGGGTATTACCATG 902
Query 981 CCGGCTAACCATACCATTGGTATCAAACCAAACTCTATCTATTTCACCCGTCATGACCGT 1040
|| |||||||||||| | |||||||| ||||||||||||||||| || ||||||||||||
Sbjct 903 CCTGCTAACCATACCCTAGGTATCAAGCCAAACTCTATCTATTTTACTCGTCATGACCGT 962
Query 1041 GCCTGTCTCCGCATCCCTTTTGATCTTGACATCTGTGTGTTCAATCTTGCAACCAAGACC 1100
||| || | |||||||||||||| ||||| | |||||||||||||||||||||||||
Sbjct 963 GCCCGTTTTAAAATCCCTTTTGATCTGGACATATATGTGTTCAATCTTGCAACCAAGACC 1022
Query 1101 CTCAA-C--T-C---------GCCAACATGAATCTCAAGGATGCTCAATGG 1138
||||| | | | ||||||||||||||||||||||||||||||
Sbjct 1023 CTCAAACGCTTCCCTCAACTCGCCAACATGAATCTCAAGGATGCTCAATGG 1073
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55823006040
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5