BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg930960 Length=1138 Score E Sequences producing significant alignments: (Bits) Value AT3G33025.1 | Symbols: | pseudogene, hypothetical protein | ch... 771 0.0 > AT3G33025.1 | Symbols: | pseudogene, hypothetical protein | chr3:13571980-13573065 FORWARD LENGTH=1086 Length=1086 Score = 771 bits (417), Expect = 0.0 Identities = 742/891 (83%), Gaps = 53/891 (6%) Strand=Plus/Plus Query 286 CAAACTCTGGTAAATGGTTTCTGATGGTAGATTCTGGATGCAATTT-GTATATTATGGAT 344 ||||||| | |||||||| ||| ||| || |||||||||||||||| | |||||| ||| Sbjct 198 CAAACTCAGATAAATGGTGTCTAATGTTATATTCTGGATGCAATTTAG-CTATTATAGAT 256 Query 345 GTGTTTAGCGA-GA-A-CAGGATCGATCTTCCGCCTCTAGAGTCGCTCCTA-CAACTTGC 400 ||||||||| | || | |||||| || ||| ||||||||||||||||| | | | | | Sbjct 257 GTGTTTAGCCAGGATAGGAGGATCAATTTTCTGCCTCTAGAGTCGCTCCAATC-AGATAC 315 Query 401 CTATGCTCTCAAGTC-TGTGAG-AGATAAGCAATGTAATAATTTTGGATTAGCTAGTGGC 458 ||| |||||||| | |||| | ||||||| || || | ||||| |||| |||||||| Sbjct 316 ATATACTCTCAAG-CGTGTG-GTAGATAAGGAA--TACT-GTTTTGAATTACCTAGTGGC 370 Query 459 TG-TTATCAG-AAAGAGATAGC-CCG-TAATCTGAGGGGCCGTTTGTGGGTAGACGAGAA 514 | |||| | || |||| | | ||| | ||||||| |||||||||||||||||| |||| Sbjct 371 -GATTAT-TGCAACGAGA-A-CGCCGATGATCTGAGAGGCCGTTTGTGGGTAGACAAGAA 426 Query 515 GACGGGAGAGTTCGTTGTAGTGTGGTTCTTTGACCCTGATATTTATTTATTCTATTGCAA 574 ||||||||||||||||||||||||||||||| ||||| ||| ||||||||||||||||| Sbjct 427 GACGGGAGAGTTCGTTGTAGTGTGGTTCTTTAACCCTTATACCTATTTATTCTATTGCAA 486 Query 575 GAAGGGGGATAATCATTACACTATCATTTCGTTGTATCACGAAGTCCCCAA-GTTATTAA 633 ||||||||||| |||| ||||| ||||| | |||| | || | |||||||| ||| ||| Sbjct 487 GAAGGGGGATACTCATAACACTGTCATTCCCTTGTCTGACCAGGTCCCCAAGGTT-GTAA 545 Query 634 AAGGCTTAAATGATCTAGTACTCAGGGGTTACCGTCTTTATATAGCATCTAAACGTGGTT 693 | ||||||| ||||||||||||| |||||||||||||||| || ||| | |||||| ||| Sbjct 546 ATGGCTTAACTGATCTAGTACTCTGGGGTTACCGTCTTTACATCGCAACCAAACGTCGTT 605 Query 694 TCGTTCGAGTTATAGATTTGTCTGGACAAC-AAGATTTCGAGGATGTCACCGGGAGTAAC 752 ||| ||||||||| |||||||||||| | | ||| ||||||||||||||||||||||||| Sbjct 606 TCGCTCGAGTTATTGATTTGTCTGGATATCAAAGGTTTCGAGGATGTCACCGGGAGTAAC 665 Query 753 CCAAAGCAAATGTTTTCTCCTCTCGGGGAACATAATTCTTTTAGCGTTGCCGTTACAACA 812 ||||||||||||||||| |||||||| |||||||||||||||||| |||| | || || | Sbjct 666 CCAAAGCAAATGTTTTCCCCTCTCGGAGAACATAATTCTTTTAGCATTGCGGATATAATA 725 Query 813 ACAGGAGAGGTTTTGTTGGTCGAGAGCAAAACCTTCGAAGACCAGAGGACCTTCCGCCTC 872 ||||||||||||||||||| ||| ||| |||||| ||| || |||||| ||| | ||| Sbjct 726 TCAGGAGAGGTTTTGTTGGTTGAGGGCATAACCTTTGAAAACTAGAGGATCTTTTGTCTC 785 Query 873 TTTAAGAAGGATCCTAACAA-T--G-CAGACCCACTTGTC--C-AC-AGCCCC----AAG 920 || || | |||||||||||| | | | ||||||| |||| | || | |||| ||| Sbjct 786 TTCAA-A-GGATCCTAACAACTTAGAC-GACCCACATGTCTACCACCACCCCCCCCCAAG 842 Query 921 CTTCTTGAGGTAGATTCTCTTGGTGATGAAGCCCTGCTTCTTGACTTGGGTATTACGGTA 980 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||| | Sbjct 843 CTTCTTGAGGTAGATTCTCTTGGTGATGAAGCCCTTCTTCTTGACTTGGGTATTACCATG 902 Query 981 CCGGCTAACCATACCATTGGTATCAAACCAAACTCTATCTATTTCACCCGTCATGACCGT 1040 || |||||||||||| | |||||||| ||||||||||||||||| || |||||||||||| Sbjct 903 CCTGCTAACCATACCCTAGGTATCAAGCCAAACTCTATCTATTTTACTCGTCATGACCGT 962 Query 1041 GCCTGTCTCCGCATCCCTTTTGATCTTGACATCTGTGTGTTCAATCTTGCAACCAAGACC 1100 ||| || | |||||||||||||| ||||| | ||||||||||||||||||||||||| Sbjct 963 GCCCGTTTTAAAATCCCTTTTGATCTGGACATATATGTGTTCAATCTTGCAACCAAGACC 1022 Query 1101 CTCAA-C--T-C---------GCCAACATGAATCTCAAGGATGCTCAATGG 1138 ||||| | | | |||||||||||||||||||||||||||||| Sbjct 1023 CTCAAACGCTTCCCTCAACTCGCCAACATGAATCTCAAGGATGCTCAATGG 1073 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 55823006040 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5