BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg930961
Length=1191
Score E
Sequences producing significant alignments: (Bits) Value
AT3G33025.1 | Symbols: | pseudogene, hypothetical protein | ch... 647 0.0
> AT3G33025.1 | Symbols: | pseudogene, hypothetical protein |
chr3:13571980-13573065 FORWARD LENGTH=1086
Length=1086
Score = 647 bits (350), Expect = 0.0
Identities = 744/928 (80%), Gaps = 51/928 (5%)
Strand=Plus/Plus
Query 271 CTCAGGGATTCGATTTCTGGCAAACTCGGGTAAATGGTTTCTGATGTTAGATTCTGGATG 330
|||||||||| | || ||| ||||||| | |||||||| ||| |||||| ||||||||||
Sbjct 178 CTCAGGGATTTGGTTCCTGACAAACTCAGATAAATGGTGTCTAATGTTATATTCTGGATG 237
Query 331 CAACTTGTA--TATTATGGATGTGTTTAGCGA-GA-A-AAGGATCGATCTTCCACCTCTA 385
||| || || |||||| |||||||||||| | || | |||||| || ||| ||||||
Sbjct 238 CAA-TT-TAGCTATTATAGATGTGTTTAGCCAGGATAGGAGGATCAATTTTCTGCCTCTA 295
Query 386 GAGTCCCTTGTATCAAG-TACCTATGCTCTCAAGCCT-TCGGGATATAAGGAATA-TAG- 441
||||| || ||| || ||| ||| ||||||||| | | || | |||||||||| | |
Sbjct 296 GAGTCGCTCCAATC-AGATACATATACTCTCAAGCGTGT-GGTAGATAAGGAATACT-GT 352
Query 442 TTTGATATTACCTGGTGGCTCTTGTTGCATA-TTGAACACCAG-TTATCTGAGAAGCCGT 499
||||| ||||||| ||||| || ||||| | |||| || | | |||||||| |||||
Sbjct 353 TTTGA-ATTACCTAGTGGCGATTATTGCA-ACGAGAACGCC-GATGATCTGAGAGGCCGT 409
Query 500 TTGTGGGTAGATGAGAAGACAGGAGAGTTCGTCCTAGTGTTGTTCTTTGATCCTTCT-CC 558
||||||||||| ||||||| ||||||||||| |||||| ||||||| | |||| | ||
Sbjct 410 TTGTGGGTAGACAAGAAGACGGGAGAGTTCGTTGTAGTGTGGTTCTTTAACCCTTATACC 469
Query 559 TTATTTATTCTATTGCAAGAATGGGGACAATCATTACACTGTTATTCCGGTAG-ATGACA 617
|||||||||||||||||||| ||||| | |||| ||||||| ||||| | | ||||
Sbjct 470 -TATTTATTCTATTGCAAGAAGGGGGATACTCATAACACTGTCATTCC-CTTGTCTGAC- 526
Query 618 AATTTCCCAATATGTTG-CAA-GGCGTAACTGATCTAGTACTCTGGGGTTACCGTCTTTA 675
| |||| | | |||| || ||| ||||||||||||||||||||||||||||||||||
Sbjct 527 CAGGTCCCCA-AGGTTGTAAATGGCTTAACTGATCTAGTACTCTGGGGTTACCGTCTTTA 585
Query 676 CATTGCATCTAACCGTCGTTGCGTTCGAGTTATAGATTTGTCTGGACATGAA-GGTTTCG 734
||| ||| | || ||||||| || ||||||||| |||||||||||| || || |||||||
Sbjct 586 CATCGCAACCAAACGTCGTTTCGCTCGAGTTATTGATTTGTCTGGATATCAAAGGTTTCG 645
Query 735 AGGATGTCACCGGGAGTAACCCAAAGCCAATGTTATCTCCTCTCGGAGAACATGATTCTT 794
||||||||||||||||||||||||||| |||||| || ||||||||||||||| ||||||
Sbjct 646 AGGATGTCACCGGGAGTAACCCAAAGCAAATGTTTTCCCCTCTCGGAGAACATAATTCTT 705
Query 795 TTAACATTGTGGTTACGACAGCAGGAGAGGTTTTGTTGGTGGAGAGCACAACCGTTGAAA 854
||| ||||| || || | | ||||||||||||||||||| ||| ||| |||| ||||||
Sbjct 706 TTAGCATTGCGGATATAATATCAGGAGAGGTTTTGTTGGTTGAGGGCATAACCTTTGAAA 765
Query 855 ACCAGAGAACCTTCCG-CATCTACAAGAAGAATCCTAATG-CT--GAT--CC-AGAGG-- 905
|| |||| | ||| | | ||| ||| | || |||||| || || || | | |
Sbjct 766 ACTAGAGGATCTTTTGTC-TCTTCAA-AGGA-TCCTAACAACTTAGACGACCCACATGTC 822
Query 906 -ACCAA-ATGCCCC---AT-CTTGTTGAGGTAGATTCTCTTGGTGATGAGGCCCTGCTTC 959
|||| | |||| | ||| ||||||||||||||||||||||||| ||||| ||||
Sbjct 823 TACCACCACCCCCCCCCAAGCTTCTTGAGGTAGATTCTCTTGGTGATGAAGCCCTTCTTC 882
Query 960 TCGACTTGGGTACTACTGTGCCTTCTAACCATGCCCTTGGTATCCAA-CCAAACACTATC 1018
| |||||||||| ||| ||||| |||||||| |||| |||||| || |||||| |||||
Sbjct 883 TTGACTTGGGTATTACCATGCCTGCTAACCATACCCTAGGTATC-AAGCCAAACTCTATC 941
Query 1019 TATTTCACACGTCATAACCGTGTCCGTTTCCGCATGTCTTTTGATCTGGAAATCTGTGTG 1078
||||| || |||||| |||||| |||||| || ||||||||||||| || | ||||
Sbjct 942 TATTTTACTCGTCATGACCGTGCCCGTTTTAAAATCCCTTTTGATCTGGACATATATGTG 1001
Query 1079 TTCAATCTTGCAACCAACACCCTCATCAAACACTTCCCTCATCTTGCCAACTTGAAACCC 1138
||||||||||||||||| ||||||| || | ||||||||| || |||||| |||| | |
Sbjct 1002 TTCAATCTTGCAACCAAGACCCTCA--AA-CGCTTCCCTCAACTCGCCAACATGAATCTC 1058
Query 1139 AGGGATGCTCTATGGTTTCTCCCTATGA 1166
| |||||||| |||||||| ||| ||||
Sbjct 1059 AAGGATGCTCAATGGTTTCACCCCATGA 1086
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58483634925
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5