BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg930973 Length=229 Score E Sequences producing significant alignments: (Bits) Value AT3G24332.1 | Symbols: | other RNA | chr3:8830336-8831838 REVE... 117 5e-26 AT3G24330.1 | Symbols: | O-Glycosyl hydrolases family 17 prote... 117 5e-26 > AT3G24332.1 | Symbols: | other RNA | chr3:8830336-8831838 REVERSE LENGTH=1402 Length=1402 Score = 117 bits (63), Expect = 5e-26 Identities = 75/80 (94%), Gaps = 3/80 (4%) Strand=Plus/Minus Query 33 GTCTACACCAATGTGTTTGATGCCATCAATCTCGACACTTTGATTTGTGCTATGGAGAGA 92 |||||||||||||||||||||| | ||||||||||||||||||||||||||||||||| Sbjct 655 GTCTACACCAATGTGTTTGATG-C--GAATCTCGACACTTTGATTTGTGCTATGGAGAGA 599 Query 93 TACAGCTTCTTGGGGATGAA 112 || ||||||||||||||||| Sbjct 598 TATAGCTTCTTGGGGATGAA 579 > AT3G24330.1 | Symbols: | O-Glycosyl hydrolases family 17 protein | chr3:8830336-8831838 FORWARD LENGTH=1503 Length=1503 Score = 117 bits (63), Expect = 5e-26 Identities = 75/80 (94%), Gaps = 3/80 (4%) Strand=Plus/Plus Query 33 GTCTACACCAATGTGTTTGATGCCATCAATCTCGACACTTTGATTTGTGCTATGGAGAGA 92 |||||||||||||||||||||| | ||||||||||||||||||||||||||||||||| Sbjct 748 GTCTACACCAATGTGTTTGATG-C--GAATCTCGACACTTTGATTTGTGCTATGGAGAGA 804 Query 93 TACAGCTTCTTGGGGATGAA 112 || ||||||||||||||||| Sbjct 805 TATAGCTTCTTGGGGATGAA 824 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 10304888545 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5