BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg930973
Length=229
Score E
Sequences producing significant alignments: (Bits) Value
AT3G24332.1 | Symbols: | other RNA | chr3:8830336-8831838 REVE... 117 5e-26
AT3G24330.1 | Symbols: | O-Glycosyl hydrolases family 17 prote... 117 5e-26
> AT3G24332.1 | Symbols: | other RNA | chr3:8830336-8831838 REVERSE
LENGTH=1402
Length=1402
Score = 117 bits (63), Expect = 5e-26
Identities = 75/80 (94%), Gaps = 3/80 (4%)
Strand=Plus/Minus
Query 33 GTCTACACCAATGTGTTTGATGCCATCAATCTCGACACTTTGATTTGTGCTATGGAGAGA 92
|||||||||||||||||||||| | |||||||||||||||||||||||||||||||||
Sbjct 655 GTCTACACCAATGTGTTTGATG-C--GAATCTCGACACTTTGATTTGTGCTATGGAGAGA 599
Query 93 TACAGCTTCTTGGGGATGAA 112
|| |||||||||||||||||
Sbjct 598 TATAGCTTCTTGGGGATGAA 579
> AT3G24330.1 | Symbols: | O-Glycosyl hydrolases family 17 protein
| chr3:8830336-8831838 FORWARD LENGTH=1503
Length=1503
Score = 117 bits (63), Expect = 5e-26
Identities = 75/80 (94%), Gaps = 3/80 (4%)
Strand=Plus/Plus
Query 33 GTCTACACCAATGTGTTTGATGCCATCAATCTCGACACTTTGATTTGTGCTATGGAGAGA 92
|||||||||||||||||||||| | |||||||||||||||||||||||||||||||||
Sbjct 748 GTCTACACCAATGTGTTTGATG-C--GAATCTCGACACTTTGATTTGTGCTATGGAGAGA 804
Query 93 TACAGCTTCTTGGGGATGAA 112
|| |||||||||||||||||
Sbjct 805 TATAGCTTCTTGGGGATGAA 824
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 10304888545
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5