BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg930977

Length=250
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G10720.1 | Symbols: AHK5, CKI2, HK5 | histidine kinase 5 | c...   294    2e-79
  AT5G10680.1 | Symbols:  | calmodulin-binding protein-related | ...   156    1e-37


> AT5G10720.1 | Symbols: AHK5, CKI2, HK5 | histidine kinase 5 | 
chr5:3385901-3390686 FORWARD LENGTH=3291
Length=3291

 Score =  294 bits (159),  Expect = 2e-79
 Identities = 193/209 (92%), Gaps = 4/209 (2%)
 Strand=Plus/Plus

Query  32   TGTTCCGGTTTTGGATGAGACTAGTGATTTGTTCCGCAGGTTTAGGCAGAAGAAACGAGA  91
            ||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct  761  TGTTCCGGTTTTGGATGAGACGAGTGATTTGTTCCGCAGGTTTAGGCAGAAAAAACGAGA  820

Query  92   TGCGTTGTTCGATAGCAAGAAGATTGAGATCTATGAGGAGTTTGACACGGTTGCATATTG  151
            ||| ||| |||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct  821  TGCCTTGGTCGATAGCAAGAAGATTGAGATCTATGAGGAGTTTGACACTGTTGCATATTG  880

Query  152  GAAACAGAAGGCGTTGAAT-TTGGAGAAAATGCTTGAGGCAAGTACTGAGAGAGAAAGGA  210
            ||||||||||||||||| | ||| |||||||||||||||| |||||||||||||||||| 
Sbjct  881  GAAACAGAAGGCGTTGAGTCTTG-AGAAAATGCTTGAGGCGAGTACTGAGAGAGAAAGGC  939

Query  211  GACTAATCGAGAATAGCTGAGTGAGGGTT  239
            || | || |||||  |||||||||| |||
Sbjct  940  GATTGATGGAGAA--GCTGAGTGAGAGTT  966


> AT5G10680.1 | Symbols:  | calmodulin-binding protein-related 
| chr5:3373584-3374309 FORWARD LENGTH=726
Length=726

 Score =  156 bits (84),  Expect = 1e-37
 Identities = 98/105 (93%), Gaps = 0/105 (0%)
 Strand=Plus/Plus

Query  32   TGTTCCGGTTTTGGATGAGACTAGTGATTTGTTCCGCAGGTTTAGGCAGAAGAAACGAGA  91
            |||| |||||||||||||||| ||||||||||||||| ||||||||||||||| ||||||
Sbjct  375  TGTTTCGGTTTTGGATGAGACGAGTGATTTGTTCCGCGGGTTTAGGCAGAAGAGACGAGA  434

Query  92   TGCGTTGTTCGATAGCAAGAAGATTGAGATCTATGAGGAGTTTGA  136
             | |||| |||||||||||||||||||||||||||||||||||||
Sbjct  435  AGTGTTGGTCGATAGCAAGAAGATTGAGATCTATGAGGAGTTTGA  479



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 11360511274


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5