BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg930978
Length=412
Score E
Sequences producing significant alignments: (Bits) Value
AT2G07680.1 | Symbols: ATMRP11, MRP11, ABCC13 | multidrug resis... 340 5e-93
> AT2G07680.1 | Symbols: ATMRP11, MRP11, ABCC13 | multidrug resistance-associated
protein 11 | chr2:3514745-3522491 FORWARD
LENGTH=4244
Length=4244
Score = 340 bits (184), Expect = 5e-93
Identities = 249/279 (89%), Gaps = 9/279 (3%)
Strand=Plus/Plus
Query 48 AAAAGCTACATTGAGAAGTGTGTGTTGTATGTAATATCTGCACTTGGAGCATGTTTGTCA 107
||||||||||||||||||||| |||||||||||| | ||||||||||||| |||||||||
Sbjct 186 AAAAGCTACATTGAGAAGTGTTTGTTGTATGTAACACCTGCACTTGGAGCTTGTTTGTCA 245
Query 108 TGTGTGGACTTGGTGTTGCTTGTGAGAACAAACCGTAGGAGAGAAGTCATG-T-T-TCTT 164
||||||||||||||||| |||||||||||||||||||||||||||||||| | | | ||
Sbjct 246 TGTGTGGACTTGGTGTTACTTGTGAGAACAAACCGTAGGAGAGAAGTCATTCTCTGTTTT 305
Query 165 --CCG-TTGTCTCGTTTCGCAATGTGGATTTCCATCATGCTCTCATCGAAGTTTGCTTGT 221
|| |||||| |||||| |||||||||| || |||| ||||||| |||||||||||||
Sbjct 306 GTCCCCTTGTCTGGTTTCGTAATGTGGATTGCCGTCATCCTCTCATTGAAGTTTGCTTGT 365
Query 222 -G--CGTGCTGCGTTTTCGCTAGACGGATTCTATGTTTCTGGTGGATCTTTAGATTCCTA 278
| ||||| ||||||| |||| | ||||||||||||||||||||||||||||||||||
Sbjct 366 TGTGCGTGCCACGTTTTCACTAGCCAGATTCTATGTTTCTGGTGGATCTTTAGATTCCTA 425
Query 279 ACAGACGCCCTTCATCTTAACATGATTTTCACTTTACAG 317
||||| |||||||||||||||||||||||||| ||||||
Sbjct 426 ACAGATGCCCTTCATCTTAACATGATTTTCACATTACAG 464
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 19503886612
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5