BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg930992
Length=2341
Score E
Sequences producing significant alignments: (Bits) Value
AT2G07776.2 | Symbols: | unknown protein; BEST Arabidopsis tha... 693 0.0
AT2G10600.1 | Symbols: | transposable element gene | chr2:4127... 222 1e-56
AT2G07827.2 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 52.8 1e-05
> AT2G07776.2 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:ATMG00530.1);
Has 35333 Blast hits to 34131 proteins in 2444 species: Archae
- 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants
- 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI
BLink). | chr2:3246019-3246901 REVERSE LENGTH=883
Length=883
Score = 693 bits (375), Expect = 0.0
Identities = 402/414 (97%), Gaps = 5/414 (1%)
Strand=Plus/Plus
Query 1931 TGAAACTATATTGAGGAGAGGGAAGGGGACTTATGTAACTATATTCCAAATCCTTCTCCC 1990
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1 TGAAACTATATTGAGGAGAGGGAAGGGGACTTATGTAACTATATTCCGAATCCTTCTCCC 60
Query 1991 CGTCAAAATCTGCCTCCCTTGCCCATAAGGAGAGAGTCTCCCTAGTGGTGGAATCCTTTA 2050
| |||||||||||||||||||||||||||||||||||||||||||| | |||||||||||
Sbjct 61 CATCAAAATCTGCCTCCCTTGCCCATAAGGAGAGAGTCTCCCTAGT-GAGGAATCCTTTA 119
Query 2051 GAACTGATGACGTCCTAGCTGTGAGCTGACCCAAGAGCTACACTGATTAGGAAGCAGATT 2110
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 120 GAACTGATGACGTCCTAGCTGTGAGCTGACCCAAGAGCTACACTGATTAGGAAGCAGATT 179
Query 2111 CCGCACAGAAGACCAAGCAAATCTCCTCTTCTAGTCTTACCCCCAGGCTGTGGTGCTACG 2170
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 180 CCGCACAGAAGACCAAGCAAATCTCCTCTTCTAGTCTTACCCCCAGGCTGTGGTGCTACG 239
Query 2171 AGATGGCAATTTCTCGTATAGAAGAATAGATCCGCGGACCTATTGATTTACCATAGATGC 2230
|||||||||||| ||||||||||||||||||||| || |||||||||| ||||||||| |
Sbjct 240 AGATGGCAATTTATCGTATAGAAGAATAGATCCGTGGGCCTATTGATTGACCATAGAT-C 298
Query 2231 ---GAACCGATCGACTGCTATCTAAGAGAAGATAAGTAGTTCTTCTATCGTTCAAGGGCA 2287
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 299 ATAGAACCGATCGACTGCTATCTAAGAGAAGATAAGTAGTTCTTCTATCGTTCAAGGGCA 358
Query 2288 AGGGGGAGAACATGTAGCGGCTTGCCTAGATCTCGTATTTCCCACGTAGTCCGT 2341
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 359 AGGGGGAGAACATGTAGCGGCTTGCCTAGATCTCGTATTTCCCACGTAGTCCGT 412
> AT2G10600.1 | Symbols: | transposable element gene | chr2:4127908-4131031
REVERSE LENGTH=3124
Length=3124
Score = 222 bits (120), Expect = 1e-56
Identities = 126/129 (98%), Gaps = 0/129 (0%)
Strand=Plus/Minus
Query 1822 GAGAGGTTGTGAACACAAACTCGACTGATAAAGGAGAGGTCCGGAGGTATTAACTAGTTG 1881
||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1131 GAGAGGTGGTGAACACAAACTCGACTGATAAAGGAGAGGTCCAGAGGTATTAACTAGTTG 1072
Query 1882 ATGAGGTCTCGACGAGCGACTAAAAGGAGAGGTACTGACGTGACTCGAGTGAAACTATAT 1941
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1071 ATGAGGTCTCAACGAGCGACTAAAAGGAGAGGTACTGACGTGACTCGAGTGAAACTATAT 1012
Query 1942 TGAGGAGAG 1950
|||||||||
Sbjct 1011 TGAGGAGAG 1003
> AT2G07827.2 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: cellular_component unknown; Has 1 Blast hits
to 1 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa
- 0; Fungi - 0; Plants - 1; Viruses - 0; Other Eukaryotes
- 0 (source: NCBI BLink). | chr2:3474996-3476845 FORWARD LENGTH=540
Length=540
Score = 52.8 bits (28), Expect = 1e-05
Identities = 28/28 (100%), Gaps = 0/28 (0%)
Strand=Plus/Plus
Query 1822 GAGAGGTTGTGAACACAAACTCGACTGA 1849
||||||||||||||||||||||||||||
Sbjct 513 GAGAGGTTGTGAACACAAACTCGACTGA 540
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 116214261675
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5