BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg930993
Length=374
Score E
Sequences producing significant alignments: (Bits) Value
AT2G07776.2 | Symbols: | unknown protein; BEST Arabidopsis tha... 688 0.0
ATMG00530.1 | Symbols: ORF109 | hypothetical protein | chrM:147... 610 3e-174
AT2G07663.1 | Symbols: | Pseudogene of AT2G07776 | chr2:340371... 610 3e-174
> AT2G07776.2 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:ATMG00530.1);
Has 35333 Blast hits to 34131 proteins in 2444 species: Archae
- 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants
- 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI
BLink). | chr2:3246019-3246901 REVERSE LENGTH=883
Length=883
Score = 688 bits (372), Expect = 0.0
Identities = 372/372 (100%), Gaps = 0/372 (0%)
Strand=Plus/Plus
Query 1 GAAAACGAACATAGGATCATCATCATGGCCCTTTTCTTCTTTCTTTTGCTGCTGATCTCA 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 512 GAAAACGAACATAGGATCATCATCATGGCCCTTTTCTTCTTTCTTTTGCTGCTGATCTCA 571
Query 61 CATCGAGAGCAGCTCCTTCTTGTTCAGGGTCATCAGATGAGAGATCTTCTTCCGACTCCG 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 572 CATCGAGAGCAGCTCCTTCTTGTTCAGGGTCATCAGATGAGAGATCTTCTTCCGACTCCG 631
Query 121 AGAAATCGGTCAAACGGGAGGCTACCCTCTCCTTTTAGTCGAGTAATCAATCCCTCGACT 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 632 AGAAATCGGTCAAACGGGAGGCTACCCTCTCCTTTTAGTCGAGTAATCAATCCCTCGACT 691
Query 181 CATCTCTCTATCCATAAAAAAGCCCTTCCCAGAGGAGAGCGGAAGCTCCAGGATGAGTAT 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 692 CATCTCTCTATCCATAAAAAAGCCCTTCCCAGAGGAGAGCGGAAGCTCCAGGATGAGTAT 751
Query 241 GCCCTGGATTCCCGGATTCATTCTCGTCCTGATCCACTCTGGAATTTTCGGAATCTACAA 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 752 GCCCTGGATTCCCGGATTCATTCTCGTCCTGATCCACTCTGGAATTTTCGGAATCTACAA 811
Query 301 AAACATTCTAGGAAAGGGCTCGTAATGATCTTCTCAAAGATCACAAGGTGCTGAAGTGGC 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 812 AAACATTCTAGGAAAGGGCTCGTAATGATCTTCTCAAAGATCACAAGGTGCTGAAGTGGC 871
Query 361 AGGATAGGAGGG 372
||||||||||||
Sbjct 872 AGGATAGGAGGG 883
> ATMG00530.1 | Symbols: ORF109 | hypothetical protein | chrM:147282-147611
REVERSE LENGTH=330
Length=330
Score = 610 bits (330), Expect = 3e-174
Identities = 330/330 (100%), Gaps = 0/330 (0%)
Strand=Plus/Plus
Query 25 ATGGCCCTTTTCTTCTTTCTTTTGCTGCTGATCTCACATCGAGAGCAGCTCCTTCTTGTT 84
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGCCCTTTTCTTCTTTCTTTTGCTGCTGATCTCACATCGAGAGCAGCTCCTTCTTGTT 60
Query 85 CAGGGTCATCAGATGAGAGATCTTCTTCCGACTCCGAGAAATCGGTCAAACGGGAGGCTA 144
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 CAGGGTCATCAGATGAGAGATCTTCTTCCGACTCCGAGAAATCGGTCAAACGGGAGGCTA 120
Query 145 CCCTCTCCTTTTAGTCGAGTAATCAATCCCTCGACTCATCTCTCTATCCATAAAAAAGCC 204
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 CCCTCTCCTTTTAGTCGAGTAATCAATCCCTCGACTCATCTCTCTATCCATAAAAAAGCC 180
Query 205 CTTCCCAGAGGAGAGCGGAAGCTCCAGGATGAGTATGCCCTGGATTCCCGGATTCATTCT 264
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 CTTCCCAGAGGAGAGCGGAAGCTCCAGGATGAGTATGCCCTGGATTCCCGGATTCATTCT 240
Query 265 CGTCCTGATCCACTCTGGAATTTTCGGAATCTACAAAAACATTCTAGGAAAGGGCTCGTA 324
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 CGTCCTGATCCACTCTGGAATTTTCGGAATCTACAAAAACATTCTAGGAAAGGGCTCGTA 300
Query 325 ATGATCTTCTCAAAGATCACAAGGTGCTGA 354
||||||||||||||||||||||||||||||
Sbjct 301 ATGATCTTCTCAAAGATCACAAGGTGCTGA 330
> AT2G07663.1 | Symbols: | Pseudogene of AT2G07776 | chr2:3403717-3404046
REVERSE LENGTH=330
Length=330
Score = 610 bits (330), Expect = 3e-174
Identities = 330/330 (100%), Gaps = 0/330 (0%)
Strand=Plus/Plus
Query 25 ATGGCCCTTTTCTTCTTTCTTTTGCTGCTGATCTCACATCGAGAGCAGCTCCTTCTTGTT 84
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGCCCTTTTCTTCTTTCTTTTGCTGCTGATCTCACATCGAGAGCAGCTCCTTCTTGTT 60
Query 85 CAGGGTCATCAGATGAGAGATCTTCTTCCGACTCCGAGAAATCGGTCAAACGGGAGGCTA 144
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 CAGGGTCATCAGATGAGAGATCTTCTTCCGACTCCGAGAAATCGGTCAAACGGGAGGCTA 120
Query 145 CCCTCTCCTTTTAGTCGAGTAATCAATCCCTCGACTCATCTCTCTATCCATAAAAAAGCC 204
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 CCCTCTCCTTTTAGTCGAGTAATCAATCCCTCGACTCATCTCTCTATCCATAAAAAAGCC 180
Query 205 CTTCCCAGAGGAGAGCGGAAGCTCCAGGATGAGTATGCCCTGGATTCCCGGATTCATTCT 264
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 CTTCCCAGAGGAGAGCGGAAGCTCCAGGATGAGTATGCCCTGGATTCCCGGATTCATTCT 240
Query 265 CGTCCTGATCCACTCTGGAATTTTCGGAATCTACAAAAACATTCTAGGAAAGGGCTCGTA 324
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 CGTCCTGATCCACTCTGGAATTTTCGGAATCTACAAAAACATTCTAGGAAAGGGCTCGTA 300
Query 325 ATGATCTTCTCAAAGATCACAAGGTGCTGA 354
||||||||||||||||||||||||||||||
Sbjct 301 ATGATCTTCTCAAAGATCACAAGGTGCTGA 330
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 17593712150
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5