BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg930994

Length=388
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  ATMG00516.1 | Symbols: NAD1C, NAD1 | NADH dehydrogenase 1C | ch...   110    1e-23


> ATMG00516.1 | Symbols: NAD1C, NAD1 | NADH dehydrogenase 1C | 
chrM:143219-147048 REVERSE LENGTH=318
Length=318

 Score =  110 bits (59),  Expect = 1e-23
 Identities = 59/59 (100%), Gaps = 0/59 (0%)
 Strand=Plus/Plus

Query  97   TCTTCAATGGGGTCTGCTCttttttttttGGGAGAGTATGCCAATATGATCTTAATGAG  155
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  260  TCTTCAATGGGGTCTGCTCTTTTTTTTTTGGGAGAGTATGCCAATATGATCTTAATGAG  318



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 18297460636


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5