BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg930997
Length=800
Score E
Sequences producing significant alignments: (Bits) Value
AT2G07674.1 | Symbols: | Unknown conserved protein | chr2:3269... 1375 0.0
ATMG01010.1 | Symbols: ORF118 | Unknown conserved protein | chr... 660 0.0
ATMG01020.1 | Symbols: ORF153B | hypothetical protein | chrM:26... 470 1e-131
ATMG01000.1 | Symbols: ORF114 | hypothetical protein | chrM:260... 414 5e-115
ATMG00670.1 | Symbols: ORF275 | hypothetical protein | chrM:191... 99.0 6e-20
> AT2G07674.1 | Symbols: | Unknown conserved protein | chr2:3269151-3269906
FORWARD LENGTH=756
Length=756
Score = 1375 bits (744), Expect = 0.0
Identities = 752/756 (99%), Gaps = 0/756 (0%)
Strand=Plus/Plus
Query 24 ATGGGGTTCGTGGGATCTTTGATCCGGATCGAAGTCATCCACCTAGTGGGGGGTCTGGCT 83
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGGGTTCGTGGGATCTTTGATCCGGATCGAAGTCATCCACCTAGTGGGGGGTCTGGCT 60
Query 84 TTGCCCGTGTTGGGACTTTTTGTCTTGAATGCAATAGGGGGGCAAGCACTTCCTTCTACC 143
|||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||
Sbjct 61 TTGCCCGTGTTGGGACCTTTGGTCTTGAATGCAATAGGGGGGCAAGCACTTCCTTCTACC 120
Query 144 GGCCCTTCCGGGTCGGGCAGTTCTTCCGTGTGGGAGGAAGATTCCTTTGAACTGGGAGTT 203
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 121 GGCCCTTCCGGGTCGGGCAGTTCTTCCATGTGGGAGGAAGATTCCTTTGAACTGGGAGTT 180
Query 204 CTCGAGGAATCCGACTcccccccGGCAGGGGGGTCCCGAACGGAAGAGGGGGAACCCTCG 263
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 CTCGAGGAATCCGACTCCCCCCCGGCAGGGGGGTCCCGAACGGAAGAGGGGGAACCCTCG 240
Query 264 GTAAATCAGGGCAGTCCCCTCCCGTCCCAAACGGAAGAGGGGGAACCCTCGGTAAATCAA 323
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 241 GTAAATCAGGGCAGTCCCCTCCCGTCCCAAACAGAAGAGGGGGAACCCTCGGTAAATCAA 300
Query 324 GTGCCCCAGGAAGCTGGGCCTGCGCTTCCAGCTAATCCAGTCCCTCCCgggggggAGGAA 383
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 GTGCCCCAGGAAGCTGGGCCTGCGCTTCCAGCTAATCCAGTCCCTCCCGGGGGGGAGGAA 360
Query 384 GCTGGGCCAGTAGTCCCCTATCCATACAGGAGGGATGAAATGATTgggggggATAGCGTA 443
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 GCTGGGCCAGTAGTCCCCTATCCATACAGGAGGGATGAAATGATTGGGGGGGATAGCGTA 420
Query 444 GAGGCGATAGAACGCCGCCTTCTGGCGAAATACCCCGAAGGCTCTCCCTCTGCGGAGATC 503
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 GAGGCGATAGAACGCCGCCTTCTGGCGAAATACCCCGAAGGCTCTCCCTCTGCGGAGATC 480
Query 504 ATAGAGATGGCCCGAATAGAGGCCGAAGATCTATTCGAGATCAAAGCCCAAATCATCCAA 563
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 ATAGAGATGGCCCGAATAGAGGCCGAAGATCTATTCGAGATCAAAGCCCAAATCATCCAA 540
Query 564 CGGATGGCTCTATATGACCCAACCGGCGATTGGATGGCGCGTGGGGCTCGGGCCCTCGAT 623
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 CGGATGGCTCTATATGACCCAACCGGCGATTGGATGGCGCGTGGGGCTCGGGCCCTCGAT 600
Query 624 AATCCGAGGACCACTAGTGGGGAAGAGTCCTTGGAGCGTCTTTATGATATATGGAAGGAC 683
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 AATCCGAGGACCACTAGTGGGGAAGAGTCCTTGGAGCGTCTTTATGATATATGGAAGGAC 660
Query 684 CTCCAAGAAACCGGGCCCCTCTCGGACGAGTTTTCTCGTTTACAAGAGAAAGTATTCCTC 743
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 CTCCAAGAAACCGGGCCCCTCTCGGACGAGTTTTCTCGTTTACAAGAGAAAGTATTCCTC 720
Query 744 AAGAAAGGCGGCCCTgggggggACCCTATCGCATAA 779
||||||||||||||||||||||||||||||||||||
Sbjct 721 AAGAAAGGCGGCCCTGGGGGGGACCCTATCGCATAA 756
Score = 62.1 bits (33), Expect = 8e-09
Identities = 35/36 (97%), Gaps = 0/36 (0%)
Strand=Plus/Plus
Query 287 GTCCCAAACGGAAGAGGGGGAACCCTCGGTAAATCA 322
||||| ||||||||||||||||||||||||||||||
Sbjct 213 GTCCCGAACGGAAGAGGGGGAACCCTCGGTAAATCA 248
> ATMG01010.1 | Symbols: ORF118 | Unknown conserved protein | chrM:261105-261461
REVERSE LENGTH=357
Length=357
Score = 660 bits (357), Expect = 0.0
Identities = 357/357 (100%), Gaps = 0/357 (0%)
Strand=Plus/Plus
Query 423 ATGATTgggggggATAGCGTAGAGGCGATAGAACGCCGCCTTCTGGCGAAATACCCCGAA 482
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGATTGGGGGGGATAGCGTAGAGGCGATAGAACGCCGCCTTCTGGCGAAATACCCCGAA 60
Query 483 GGCTCTCCCTCTGCGGAGATCATAGAGATGGCCCGAATAGAGGCCGAAGATCTATTCGAG 542
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 GGCTCTCCCTCTGCGGAGATCATAGAGATGGCCCGAATAGAGGCCGAAGATCTATTCGAG 120
Query 543 ATCAAAGCCCAAATCATCCAACGGATGGCTCTATATGACCCAACCGGCGATTGGATGGCG 602
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 ATCAAAGCCCAAATCATCCAACGGATGGCTCTATATGACCCAACCGGCGATTGGATGGCG 180
Query 603 CGTGGGGCTCGGGCCCTCGATAATCCGAGGACCACTAGTGGGGAAGAGTCCTTGGAGCGT 662
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 CGTGGGGCTCGGGCCCTCGATAATCCGAGGACCACTAGTGGGGAAGAGTCCTTGGAGCGT 240
Query 663 CTTTATGATATATGGAAGGACCTCCAAGAAACCGGGCCCCTCTCGGACGAGTTTTCTCGT 722
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 CTTTATGATATATGGAAGGACCTCCAAGAAACCGGGCCCCTCTCGGACGAGTTTTCTCGT 300
Query 723 TTACAAGAGAAAGTATTCCTCAAGAAAGGCGGCCCTgggggggACCCTATCGCATAA 779
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 TTACAAGAGAAAGTATTCCTCAAGAAAGGCGGCCCTGGGGGGGACCCTATCGCATAA 357
> ATMG01020.1 | Symbols: ORF153B | hypothetical protein | chrM:261617-262078
REVERSE LENGTH=462
Length=462
Score = 470 bits (254), Expect = 1e-131
Identities = 263/267 (99%), Gaps = 1/267 (0%)
Strand=Plus/Plus
Query 1 TCTATCTCTTTTTGGTCTTTTCCATGGGGTTCGTGGGATCTTTGATCCGGATCGAAGTCA 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 197 TCTATCTCTTTTTGGTCTTTTCCATGGGGTTCGTGGGATCTTTGATCCGGATCGAAGTCA 256
Query 61 TCCACCTAGTGGGGGGTCTGGCTTTGCCCGTGTTGGGACTTTTTGTCTTGAATGCAATAG 120
||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||
Sbjct 257 TCCACCTAGTGGGGGGTCTGGCTTTGCCCGTGTTGGGACCTTTGGTCTTGAATGCAATAG 316
Query 121 GGGGGCAAGCACTTCCTTCTACCGGCCCTTCCGGGTCGGGCAGTTCTTCCGTGTGGGAGG 180
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 317 GGGGGCAAGCACTTCCTTCTACCGGCCCTTCCGGGTCGGGCAGTTCTTCCATGTGGGAGG 376
Query 181 AAGATTCCTTTGAACTGGGAGTTCTCGAGGAATCCGACTcccccccGGCAGGGGGGTCCC 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 377 AAGATTCCTTTGAACTGGGAGTTCTCGAGGAATCCGACTCCCCCCCGGCAGGGGG-TCCC 435
Query 241 GAACGGAAGAGGGGGAACCCTCGGTAA 267
|||||||||||||||||||||||||||
Sbjct 436 GAACGGAAGAGGGGGAACCCTCGGTAA 462
> ATMG01000.1 | Symbols: ORF114 | hypothetical protein | chrM:260963-261307
REVERSE LENGTH=345
Length=345
Score = 414 bits (224), Expect = 5e-115
Identities = 224/224 (100%), Gaps = 0/224 (0%)
Strand=Plus/Plus
Query 577 ATGACCCAACCGGCGATTGGATGGCGCGTGGGGCTCGGGCCCTCGATAATCCGAGGACCA 636
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGACCCAACCGGCGATTGGATGGCGCGTGGGGCTCGGGCCCTCGATAATCCGAGGACCA 60
Query 637 CTAGTGGGGAAGAGTCCTTGGAGCGTCTTTATGATATATGGAAGGACCTCCAAGAAACCG 696
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 CTAGTGGGGAAGAGTCCTTGGAGCGTCTTTATGATATATGGAAGGACCTCCAAGAAACCG 120
Query 697 GGCCCCTCTCGGACGAGTTTTCTCGTTTACAAGAGAAAGTATTCCTCAAGAAAGGCGGCC 756
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 GGCCCCTCTCGGACGAGTTTTCTCGTTTACAAGAGAAAGTATTCCTCAAGAAAGGCGGCC 180
Query 757 CTgggggggACCCTATCGCATAAGGTCTGCAAGCCTTTCGGGAT 800
||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 CTGGGGGGGACCCTATCGCATAAGGTCTGCAAGCCTTTCGGGAT 224
> ATMG00670.1 | Symbols: ORF275 | hypothetical protein | chrM:191055-191882
REVERSE LENGTH=828
Length=828
Score = 99.0 bits (53), Expect = 6e-20
Identities = 53/53 (100%), Gaps = 0/53 (0%)
Strand=Plus/Plus
Query 289 CCCAAACGGAAGAGGGGGAACCCTCGGTAAATCAAGTGCCCCAGGAAGCTGGG 341
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 458 CCCAAACGGAAGAGGGGGAACCCTCGGTAAATCAAGTGCCCCAGGAAGCTGGG 510
Score = 58.4 bits (31), Expect = 1e-07
Identities = 33/34 (97%), Gaps = 0/34 (0%)
Strand=Plus/Plus
Query 238 CCCGAACGGAAGAGGGGGAACCCTCGGTAAATCA 271
||| ||||||||||||||||||||||||||||||
Sbjct 458 CCCAAACGGAAGAGGGGGAACCCTCGGTAAATCA 491
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38931463925
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5