BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg930998

Length=402
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  ATMG00990.1 | Symbols: NAD3 | NADH dehydrogenase 3 | chrM:26064...   654    0.0  
  AT2G07751.1 | Symbols:  | NADH:ubiquinone/plastoquinone oxidore...   649    0.0  
  ATMG01000.1 | Symbols: ORF114 | hypothetical protein | chrM:260...   115    3e-25


> ATMG00990.1 | Symbols: NAD3 | NADH dehydrogenase 3 | chrM:260647-261006 
REVERSE LENGTH=360
Length=360

 Score =  654 bits (354),  Expect = 0.0
 Identities = 358/360 (99%), Gaps = 0/360 (0%)
 Strand=Plus/Plus

Query  22   ATGATGTTAGAATTTGCACCAATTTCTATCTATTTAGTGATTAGTCTGCTAGTTTCTTTG  81
            ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1    ATGATGTCAGAATTTGCACCAATTTCTATCTATTTAGTGATTAGTCTGCTAGTTTCTTTG  60

Query  82   ATCCTACTCGGTGTTCCTTTTCCATTTGCTTCCAATAGTTCTACCTACCCAGAAAAATTG  141
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  61   ATCCTACTCGGTGTTCCTTTTCCATTTGCTTCCAATAGTTCTACCTACCCAGAAAAATTG  120

Query  142  TCGGCCTACGAATGTGGTTTCGATCCTTCCGGTGATGCCAGAAGTCGTTTCGATATACGA  201
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  121  TCGGCCTACGAATGTGGTTTCGATCCTTCCGGTGATGCCAGAAGTCGTTTCGATATACGA  180

Query  202  TTTTATCTTGTTTCAATTTTATTTTTAATCCCTGATCTGGAAGTAACCTTTTTCTTTCCT  261
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  181  TTTTATCTTGTTTCAATTTTATTTTTAATCCCTGATCTGGAAGTAACCTTTTTCTTTCCT  240

Query  262  TGGGCAGTACCTCCCAACAAGATTGATCTGTTTGGATTTTGGTCCATGATGGCCTTTTTA  321
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  241  TGGGCAGTACCTCCCAACAAGATTGATCTGTTTGGATTTTGGTCCATGATGGCCTTTTTA  300

Query  322  TTTATTTTGACGATTGGATTTCTCTATGAATGGAAAAGGGGTGCTTCGGATCGGGAGTAA  381
            ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct  301  TTTATTTTGACGATTGGATTTCTATATGAATGGAAAAGGGGTGCTTCGGATCGGGAGTAA  360


> AT2G07751.1 | Symbols:  | NADH:ubiquinone/plastoquinone oxidoreductase, 
chain 3 protein | chr2:3270008-3270364 FORWARD LENGTH=357
Length=357

 Score =  649 bits (351),  Expect = 0.0
 Identities = 355/357 (99%), Gaps = 0/357 (0%)
 Strand=Plus/Plus

Query  25   ATGTTAGAATTTGCACCAATTTCTATCTATTTAGTGATTAGTCTGCTAGTTTCTTTGATC  84
            |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1    ATGTCAGAATTTGCACCAATTTCTATCTATTTAGTGATTAGTCTGCTAGTTTCTTTGATC  60

Query  85   CTACTCGGTGTTCCTTTTCCATTTGCTTCCAATAGTTCTACCTACCCAGAAAAATTGTCG  144
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  61   CTACTCGGTGTTCCTTTTCCATTTGCTTCCAATAGTTCTACCTACCCAGAAAAATTGTCG  120

Query  145  GCCTACGAATGTGGTTTCGATCCTTCCGGTGATGCCAGAAGTCGTTTCGATATACGATTT  204
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  121  GCCTACGAATGTGGTTTCGATCCTTCCGGTGATGCCAGAAGTCGTTTCGATATACGATTT  180

Query  205  TATCTTGTTTCAATTTTATTTTTAATCCCTGATCTGGAAGTAACCTTTTTCTTTCCTTGG  264
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  181  TATCTTGTTTCAATTTTATTTTTAATCCCTGATCTGGAAGTAACCTTTTTCTTTCCTTGG  240

Query  265  GCAGTACCTCCCAACAAGATTGATCTGTTTGGATTTTGGTCCATGATGGCCTTTTTATTT  324
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  241  GCAGTACCTCCCAACAAGATTGATCTGTTTGGATTTTGGTCCATGATGGCCTTTTTATTT  300

Query  325  ATTTTGACGATTGGATTTCTCTATGAATGGAAAAGGGGTGCTTCGGATCGGGAGTAA  381
            |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct  301  ATTTTGACGATTGGATTTCTATATGAATGGAAAAGGGGTGCTTCGGATCGGGAGTAA  357


> ATMG01000.1 | Symbols: ORF114 | hypothetical protein | chrM:260963-261307 
REVERSE LENGTH=345
Length=345

 Score =  115 bits (62),  Expect = 3e-25
 Identities = 64/65 (98%), Gaps = 0/65 (0%)
 Strand=Plus/Plus

Query  1    GAGAAAACAAAGTGGGCTGTAATGATGTTAGAATTTGCACCAATTTCTATCTATTTAGTG  60
            |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct  281  GAGAAAACAAAGTGGGCTGTAATGATGTCAGAATTTGCACCAATTTCTATCTATTTAGTG  340

Query  61   ATTAG  65
            |||||
Sbjct  341  ATTAG  345



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 19001209122


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5