BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg930999
Length=419
Score E
Sequences producing significant alignments: (Bits) Value
ATMG00980.1 | Symbols: RPSL2 | Ribosomal protein S12/S23 family... 682 0.0
AT2G07675.1 | Symbols: | Ribosomal protein S12/S23 family prot... 682 0.0
AT2G07773.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 119 2e-26
ATMG00910.1 | Symbols: ORF215A | hypothetical protein | chrM:24... 99.0 3e-20
> ATMG00980.1 | Symbols: RPSL2 | Ribosomal protein S12/S23 family
protein | chrM:260224-260601 REVERSE LENGTH=378
Length=378
Score = 682 bits (369), Expect = 0.0
Identities = 375/378 (99%), Gaps = 0/378 (0%)
Strand=Plus/Plus
Query 22 ATGCCCACGTTTAATCAATTGATTCGTCATGGTAGAGAAGAAAAACGGCGCACGGACCGT 81
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGCCCACGTTTAATCAATTGATTCGTCATGGTAGAGAAGAAAAACGGCGCACGGACCGT 60
Query 82 ACTCGAGCTTTGGATAAATGTCCCCAGAAAACAGGAGTATGCCCGCGTGTTTCAACGAGA 141
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 ACTCGAGCTTTGGATAAATGTCCCCAGAAAACAGGAGTATGCCCGCGTGTTTCAACGAGA 120
Query 142 ACACCGAAAAAACCTAATTCCGCTCCACGTAAGATAGCCAAAGTACGGTTGAGCAATCGA 201
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 ACACCGAAAAAACCTAATTCCGCTCCACGTAAGATAGCCAAAGTACGGTTGAGCAATCGA 180
Query 202 CATGATATATTTGCTTACATTCCGGGCGAAGGTCATAATTCGCAGGAACATTCTACGGTG 261
||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||
Sbjct 181 CATGATATATTTGCTCACATCCCGGGCGAAGGTCATAATTCGCAGGAACATTCTACGGTG 240
Query 262 TTAATAAGAGGAGGTAGAGTTAAAGATTCGCCAGGTGTAAAATCCCATTGTATTCGAGGA 321
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 241 TTAATAAGAGGAGGTAGAGTGAAAGATTCGCCAGGTGTAAAATCCCATTGTATTCGAGGA 300
Query 322 GTAAAGGATTTGATGGGAATTCCGGGTCGAAGAAGAGGCAGATCAAAATATGGTGCAGAA 381
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 GTAAAGGATTTGATGGGAATTCCGGGTCGAAGAAGAGGCAGATCAAAATATGGTGCAGAA 360
Query 382 AAACCCAAATCGATATGA 399
||||||||||||||||||
Sbjct 361 AAACCCAAATCGATATGA 378
> AT2G07675.1 | Symbols: | Ribosomal protein S12/S23 family protein
| chr2:3270410-3270787 FORWARD LENGTH=378
Length=378
Score = 682 bits (369), Expect = 0.0
Identities = 375/378 (99%), Gaps = 0/378 (0%)
Strand=Plus/Plus
Query 22 ATGCCCACGTTTAATCAATTGATTCGTCATGGTAGAGAAGAAAAACGGCGCACGGACCGT 81
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGCCCACGTTTAATCAATTGATTCGTCATGGTAGAGAAGAAAAACGGCGCACGGACCGT 60
Query 82 ACTCGAGCTTTGGATAAATGTCCCCAGAAAACAGGAGTATGCCCGCGTGTTTCAACGAGA 141
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 ACTCGAGCTTTGGATAAATGTCCCCAGAAAACAGGAGTATGCCCGCGTGTTTCAACGAGA 120
Query 142 ACACCGAAAAAACCTAATTCCGCTCCACGTAAGATAGCCAAAGTACGGTTGAGCAATCGA 201
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 ACACCGAAAAAACCTAATTCCGCTCCACGTAAGATAGCCAAAGTACGGTTGAGCAATCGA 180
Query 202 CATGATATATTTGCTTACATTCCGGGCGAAGGTCATAATTCGCAGGAACATTCTACGGTG 261
||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||
Sbjct 181 CATGATATATTTGCTCACATCCCGGGCGAAGGTCATAATTCGCAGGAACATTCTACGGTG 240
Query 262 TTAATAAGAGGAGGTAGAGTTAAAGATTCGCCAGGTGTAAAATCCCATTGTATTCGAGGA 321
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 241 TTAATAAGAGGAGGTAGAGTGAAAGATTCGCCAGGTGTAAAATCCCATTGTATTCGAGGA 300
Query 322 GTAAAGGATTTGATGGGAATTCCGGGTCGAAGAAGAGGCAGATCAAAATATGGTGCAGAA 381
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 GTAAAGGATTTGATGGGAATTCCGGGTCGAAGAAGAGGCAGATCAAAATATGGTGCAGAA 360
Query 382 AAACCCAAATCGATATGA 399
||||||||||||||||||
Sbjct 361 AAACCCAAATCGATATGA 378
> AT2G07773.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:ATMG00910.1);
Has 35333 Blast hits to 34131 proteins in 2444 species: Archae
- 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants
- 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI
BLink). | chr2:3240838-3241659 REVERSE LENGTH=822
Length=822
Score = 119 bits (64), Expect = 2e-26
Identities = 71/74 (96%), Gaps = 2/74 (3%)
Strand=Plus/Plus
Query 22 ATGCCCACGTTTAATCAATTGATTCGTCATGGTAGAGAAGAAAAACGGCGCACGGACCGT 81
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGCCCACGTTTAATCAATTGATTCGTCATGGTAGAGAAGAAAAACGGCGCACGGACCGT 60
Query 82 ACTCGA-GCTTTGG 94
||| || | |||||
Sbjct 61 ACT-GAAGTTTTGG 73
> ATMG00910.1 | Symbols: ORF215A | hypothetical protein | chrM:241306-241953
REVERSE LENGTH=648
Length=648
Score = 99.0 bits (53), Expect = 3e-20
Identities = 60/63 (95%), Gaps = 2/63 (3%)
Strand=Plus/Plus
Query 33 TAATCAATTGATTCGTCATGGTAGAGAAGAAAAACGGCGCACGGACCGTACTCGA-GCTT 91
|||||||||||||||||||||||||||||||||||||||||||||||||||| || | ||
Sbjct 12 TAATCAATTGATTCGTCATGGTAGAGAAGAAAAACGGCGCACGGACCGTACT-GAAGTTT 70
Query 92 TGG 94
|||
Sbjct 71 TGG 73
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 19855760855
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5