BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg931000

Length=652
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G07767.1 | Symbols:  | transposable element gene | chr2:3272...   496    2e-139


> AT2G07767.1 | Symbols:  | transposable element gene | chr2:3272149-3272518 
FORWARD LENGTH=370
Length=370

 Score =  496 bits (268),  Expect = 2e-139
 Identities = 268/268 (100%), Gaps = 0/268 (0%)
 Strand=Plus/Plus

Query  385  CATCGGCGATCTTTCATAGAGTTGCCGAAGCCAGAAAATCTGCTAATGCAATCCGCAGAA  444
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1    CATCGGCGATCTTTCATAGAGTTGCCGAAGCCAGAAAATCTGCTAATGCAATCCGCAGAA  60

Query  445  TTACATCAGATCAAGGTGTGGATCTATTTCGAACAAGTGATATCCAAGAAGAAGCCATTC  504
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  61   TTACATCAGATCAAGGTGTGGATCTATTTCGAACAAGTGATATCCAAGAAGAAGCCATTC  120

Query  505  GTTACTTCTCCAACCTGTTTCAGTTTTCACCGGTGAACCACACTCGAGCCTCTATCTCAT  564
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  121  GTTACTTCTCCAACCTGTTTCAGTTTTCACCGGTGAACCACACTCGAGCCTCTATCTCAT  180

Query  565  CCCTTCGCTCTCTTATCGACTTCATCAGATGCTCCAACTAGATGCAAGCGAATCTTCTGC  624
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  181  CCCTTCGCTCTCTTATCGACTTCATCAGATGCTCCAACTAGATGCAAGCGAATCTTCTGC  240

Query  625  AACAGGTTAACTACGGAGGAGATTCCAA  652
            ||||||||||||||||||||||||||||
Sbjct  241  AACAGGTTAACTACGGAGGAGATTCCAA  268



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 31496810169


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5