BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg931002

Length=733
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  ATMG00960.1 | Symbols: CCB203 | Cytochrome C assembly protein |...  1092    0.0  
  AT2G07768.1 | Symbols:  | Cytochrome C assembly protein | chr2:...   747    0.0  


> ATMG00960.1 | Symbols: CCB203 | Cytochrome C assembly protein 
| chrM:256865-257476 REVERSE LENGTH=612
Length=612

 Score = 1092 bits (591),  Expect = 0.0
 Identities = 591/591 (100%), Gaps = 0/591 (0%)
 Strand=Plus/Plus

Query  123  GCGAAGCGTGTCGTTCGTAATGGAAAGAAAGAGACCACTACTTCGCCTCTTTGTTGGACC  182
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  22   GCGAAGCGTGTCGTTCGTAATGGAAAGAAAGAGACCACTACTTCGCCTCTTTGTTGGACC  81

Query  183  GCCGGCGCGAACACAGTGGTCTCTGATCAGGACCAGGAACCAATTCGAATTTGGATCTTG  242
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  82   GCCGGCGCGAACACAGTGGTCTCTGATCAGGACCAGGAACCAATTCGAATTTGGATCTTG  141

Query  243  ACATGTTGGTGGTTTTTAACCGTAGGCATCTTGCCAGGAAGTTGGTGGGCTTATCATGAA  302
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  142  ACATGTTGGTGGTTTTTAACCGTAGGCATCTTGCCAGGAAGTTGGTGGGCTTATCATGAA  201

Query  303  TTAGGTCGGGGTGGCTGGTGGTTTCGGGATCCCGTAGAAAATGCTTCTTTTATGCCTCGG  362
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  202  TTAGGTCGGGGTGGCTGGTGGTTTCGGGATCCCGTAGAAAATGCTTCTTTTATGCCTCGG  261

Query  363  GTATTAGCCACAGCTCGTATTCATTCTGTAATTTTACCCCTTCTTCATTCTTGGACCTCG  422
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  262  GTATTAGCCACAGCTCGTATTCATTCTGTAATTTTACCCCTTCTTCATTCTTGGACCTCG  321

Query  423  TTTCTTAATATTGTGACTTTTCCATGCTGTGTCTCAGGAACCTTTTCAATACGGTCCGGA  482
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  322  TTTCTTAATATTGTGACTTTTCCATGCTGTGTCTCAGGAACCTTTTCAATACGGTCCGGA  381

Query  483  TTGCTAGCTCCCGTTCATAGTTTTGCTACAGATGATACACGAGGAATCTTTTTATGGTGG  542
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  382  TTGCTAGCTCCCGTTCATAGTTTTGCTACAGATGATACACGAGGAATCTTTTTATGGTGG  441

Query  543  TTCTTCCTTCTAATGACCGGCATATCTATGATTCTTTTCTACCAGATGAAGCAGCAGGCA  602
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  442  TTCTTCCTTCTAATGACCGGCATATCTATGATTCTTTTCTACCAGATGAAGCAGCAGGCA  501

Query  603  TCGGTCCGTAGAACGTATAAAAAAGAGATGGTTGTGGCGCGAAGTACTCTTGTGCATCTA  662
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  502  TCGGTCCGTAGAACGTATAAAAAAGAGATGGTTGTGGCGCGAAGTACTCTTGTGCATCTA  561

Query  663  CGTCACTCGGCTCGCGCGCAACCCCGCCCCGTTATGTTATGGAAGAATTGA  713
            |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  562  CGTCACTCGGCTCGCGCGCAACCCCGCCCCGTTATGTTATGGAAGAATTGA  612


> AT2G07768.1 | Symbols:  | Cytochrome C assembly protein | chr2:3273584-3274154 
FORWARD LENGTH=465
Length=465

 Score =  747 bits (404),  Expect = 0.0
 Identities = 407/408 (99%), Gaps = 1/408 (0%)
 Strand=Plus/Plus

Query  306  GGTCGGGGTGGCTGGTGGTTTCGGGATCCCGTAGAAAATGCTTCTTTTATGCCTCGGGTA  365
            |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct  59   GGTCGGGGTGGCTGGTGGTTTCGGGATCCCGTAG-AAATGCTTCTTTTATGCCTCGGGTA  117

Query  366  TTAGCCACAGCTCGTATTCATTCTGTAATTTTACCCCTTCTTCATTCTTGGACCTCGTTT  425
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  118  TTAGCCACAGCTCGTATTCATTCTGTAATTTTACCCCTTCTTCATTCTTGGACCTCGTTT  177

Query  426  CTTAATATTGTGACTTTTCCATGCTGTGTCTCAGGAACCTTTTCAATACGGTCCGGATTG  485
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  178  CTTAATATTGTGACTTTTCCATGCTGTGTCTCAGGAACCTTTTCAATACGGTCCGGATTG  237

Query  486  CTAGCTCCCGTTCATAGTTTTGCTACAGATGATACACGAGGAATCTTTTTATGGTGGTTC  545
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  238  CTAGCTCCCGTTCATAGTTTTGCTACAGATGATACACGAGGAATCTTTTTATGGTGGTTC  297

Query  546  TTCCTTCTAATGACCGGCATATCTATGATTCTTTTCTACCAGATGAAGCAGCAGGCATCG  605
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  298  TTCCTTCTAATGACCGGCATATCTATGATTCTTTTCTACCAGATGAAGCAGCAGGCATCG  357

Query  606  GTCCGTAGAACGTATAAAAAAGAGATGGTTGTGGCGCGAAGTACTCTTGTGCATCTACGT  665
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  358  GTCCGTAGAACGTATAAAAAAGAGATGGTTGTGGCGCGAAGTACTCTTGTGCATCTACGT  417

Query  666  CACTCGGCTCGCGCGCAACCCCGCCCCGTTATGTTATGGAAGAATTGA  713
            ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  418  CACTCGGCTCGCGCGCAACCCCGCCCCGTTATGTTATGGAAGAATTGA  465


 Score =  115 bits (62),  Expect = 6e-25
 Identities = 62/62 (100%), Gaps = 0/62 (0%)
 Strand=Plus/Plus

Query  142  ATGGAAAGAAAGAGACCACTACTTCGCCTCTTTGTTGGACCGCCGGCGCGAACACAGTGG  201
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1    ATGGAAAGAAAGAGACCACTACTTCGCCTCTTTGTTGGACCGCCGGCGCGAACACAGTGG  60

Query  202  TC  203
            ||
Sbjct  61   TC  62



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 35565776076


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5