BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg931003
Length=444
Score E
Sequences producing significant alignments: (Bits) Value
ATCG00350.1 | Symbols: PSAA | Photosystem I, PsaA/PsaB protein ... 425 1e-118
> ATCG00350.1 | Symbols: PSAA | Photosystem I, PsaA/PsaB protein
| chrC:39605-41857 REVERSE LENGTH=2253
Length=2253
Score = 425 bits (230), Expect = 1e-118
Identities = 238/242 (98%), Gaps = 0/242 (0%)
Strand=Plus/Plus
Query 159 TCCCAGGTGCTCATTTTGTATGGGCTTTCAGTTTCATGTTTCTATTCAGCGGGCGTGGTT 218
||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 2012 TCCTAGGTGCTCATTTTGTATGGGCTTTCAGTTTAATGTTTCTATTCAGCGGGCGTGGTT 2071
Query 219 ATTGGCAAGAACTTATTGAATCCATTGTTTGGGCTCATAATAAATGAAAAGTTGCTCCTG 278
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 2072 ATTGGCAAGAACTTATTGAATCCATTGTTTGGGCTCATAATAAATTAAAAGTTGCTCCTG 2131
Query 279 CTACTCAGCCTAGAGCCTTGAGCATTGTACAAGGACGTGCTGTAGGAGTAACCCATTACC 338
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 2132 CTACTCAGCCTAGAGCCTTGAGCATTATACAAGGACGTGCTGTAGGAGTAACCCATTACC 2191
Query 339 TTCTGGGTGGAATTGCCACAACATGGGCGTTCTTCTTAGCAAGAATTATTGCAGTAGGAT 398
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2192 TTCTGGGTGGAATTGCCACAACATGGGCGTTCTTCTTAGCAAGAATTATTGCAGTAGGAT 2251
Query 399 AA 400
||
Sbjct 2252 AA 2253
Score = 209 bits (113), Expect = 1e-53
Identities = 124/129 (96%), Gaps = 1/129 (1%)
Strand=Plus/Plus
Query 39 GTCAG-TGTGAGGGGTAGTATAAGTGATCAAGGGGTGGTAACTCATATTACTGGAGGAAA 97
||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1839 GTCAGATGTTTGGGGTAGTATAAGTGATCAAGGGGTGGTAACTCATATTACTGGAGGAAA 1898
Query 98 CTTTGCACAGAGTTCCATTACTATTAATGGGTGGCTCTGCGATTTCTTATGGGCACAAGC 157
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1899 CTTTGCACAGAGTTCCATTACTATTAATGGGTGGCTCCGCGATTTCTTATGGGCACAAGC 1958
Query 158 ATCCCAGGT 166
||| |||||
Sbjct 1959 ATCTCAGGT 1967
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 21112454580
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5