BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg931005

Length=297
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G07677.1 | Symbols:  | auxin-responsive factor (ARF) -relate...   549    5e-156


> AT2G07677.1 | Symbols:  | auxin-responsive factor (ARF) -related, 
low similarity to auxin response factor 10 (Arabidopsis 
thaliana) GI:6165644; blastp match of 82% identity and 6.9e-77 
P-value to GP|3717296|emb|CAA03738.1||A63701 unnamed protein 
product {unidentified} | chr2:3278376-3280384 FORWARD LENGTH=2009
Length=2009

 Score =  549 bits (297),  Expect = 5e-156
 Identities = 297/297 (100%), Gaps = 0/297 (0%)
 Strand=Plus/Plus

Query  1    GCTCTGTTCGCTTCTTTTTCAATGACGGTAACAGACCAACCTTCAATGGCAGATAATTAT  60
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  407  GCTCTGTTCGCTTCTTTTTCAATGACGGTAACAGACCAACCTTCAATGGCAGATAATTAT  466

Query  61   CAATTTGACTTAGGAGGTTCCGATGCAAAGGCCACACCTGTGGTTGATTGCCTCCGCCAC  120
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  467  CAATTTGACTTAGGAGGTTCCGATGCAAAGGCCACACCTGTGGTTGATTGCCTCCGCCAC  526

Query  121  CTCTCTACAGTCAGTTTAAAATTCCACTCTCACCTGTTGGTGCTTAAACTTTCAGCAGCC  180
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  527  CTCTCTACAGTCAGTTTAAAATTCCACTCTCACCTGTTGGTGCTTAAACTTTCAGCAGCC  586

Query  181  CAAAAAACACTCAAAAGCTCCGCTTCGAAAGCAGTTGTTGTTGGCATAAAGGCTCTTCGT  240
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  587  CAAAAAACACTCAAAAGCTCCGCTTCGAAAGCAGTTGTTGTTGGCATAAAGGCTCTTCGT  646

Query  241  CAAGTCGAACCACACCGAGGAGGCACTTGTTAACCACCGGATGGAGCAAGTTCGTGA  297
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  647  CAAGTCGAACCACACCGAGGAGGCACTTGTTAACCACCGGATGGAGCAAGTTCGTGA  703



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 13723095477


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5