BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg931006
Length=502
Score E
Sequences producing significant alignments: (Bits) Value
AT2G07677.1 | Symbols: | auxin-responsive factor (ARF) -relate... 917 0.0
ATMG00940.1 | Symbols: ORF164 | DNA binding | chrM:251403-25189... 872 0.0
> AT2G07677.1 | Symbols: | auxin-responsive factor (ARF) -related,
low similarity to auxin response factor 10 (Arabidopsis
thaliana) GI:6165644; blastp match of 82% identity and 6.9e-77
P-value to GP|3717296|emb|CAA03738.1||A63701 unnamed protein
product {unidentified} | chr2:3278376-3280384 FORWARD LENGTH=2009
Length=2009
Score = 917 bits (496), Expect = 0.0
Identities = 500/502 (99%), Gaps = 0/502 (0%)
Strand=Plus/Plus
Query 1 CTGGTGATTCTGTTGTATTTATGAGGAAATCGGCTGATGAGATGTTTATTGGTGTAAGGC 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 722 CTGGTGATTCTGTTGTATTTATGAGGAAATCGGCTGATGAGATGTTTATTGGTGTAAGGC 781
Query 61 GAGCACCAATCTCTAGTAACGTCGGAGGAACAAGCTTCTACGGCGGAGATGAGTACTGTA 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 782 GAGCACCAATCTCTAGTAACGTCGGAGGAACAAGCTTCTACGGCGGAGATGAGTACTGTA 841
Query 121 GTTATTATCAGAGCAATGGAGGCGTTGCTAAGGAAGACGACGGAAGTGCGAAGAAGGGGT 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 842 GTTATTATCAGAGCAATGGAGGCGTTGCTAAGGAAGACGACGGAAGTGCGAAGAAGGGGT 901
Query 181 TTAGGAGGACTGGGAAAGGGAAATTGACGGCTGAAGCTGTCTCTGAGGCGATTAATAGAG 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 902 TTAGGAGGACTGGGAAAGGGAAATTGACGGCTGAAGCTGTCTCTGAGGCGATTAATAGAG 961
Query 241 CAGCTCAGGGTTTGCCGTTTGAGGTGGTTTATTATCCTACGGCTGGATGGTCGTACTTTG 300
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 962 CAGCTCAGGGTTTGCCGTTTGAGGTGGTTTATTATCCTACGGCTGGATGGTCGGACTTTG 1021
Query 301 TGGTGAAGGCAGAAGATGTTGAGGCTTCCATGGCTATATTCTGGACTCCTGGTACTAGAG 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1022 TGGTGAAGGCAGAAGATGTTGAGGCTTCCATGGCTATATTCTGGACTCCTGGTACTAGAG 1081
Query 361 TGAAGATGGCCATGGAGACTGAGGACTCTTCGCGGATTACTTGGTTTCAGGGGATTGTCT 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1082 TGAAGATGGCCATGGAGACTGAGGACTCTTCGCGGATTACTTGGTTTCAGGGGATTGTCT 1141
Query 421 TCTCTACATATCAGGAAACTGGTCCATGGCGTGGATCTCCTTGGAAACAGCTTCAGGTAT 480
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1142 TCTATACATATCAGGAAACTGGTCCATGGCGTGGATCTCCTTGGAAACAGCTTCAGGTAT 1201
Query 481 AAGATCCCCTTCACTATTCCCT 502
||||||||||||||||||||||
Sbjct 1202 AAGATCCCCTTCACTATTCCCT 1223
> ATMG00940.1 | Symbols: ORF164 | DNA binding | chrM:251403-251897
REVERSE LENGTH=495
Length=495
Score = 872 bits (472), Expect = 0.0
Identities = 479/482 (99%), Gaps = 1/482 (0%)
Strand=Plus/Plus
Query 21 ATGAGGAAATCGGCTGATGAGATGTTTATTGGTGTAAGGCGAGCACCAATCTCTAGTAAC 80
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGAGGAAATCGGCTGATGAGATGTTTATTGGTGTAAGGCGAGCACCAATCTCTAGTAAC 60
Query 81 GTCGGAGGAACAAGCTTCTACGGCGGAGATGAGTACTGTAGTTATTATCAGAGCAATGGA 140
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 GTCGGAGGAACAAGCTTCTACGGCGGAGATGAGTACTGTAGTTATTATCAGAGCAATGGA 120
Query 141 GGCGTTGCTAAGGAAGACGACGGAAGTGCGAAGAAGGGGTTTAGGAGGACTGGGAAAGGG 200
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 GGCGTTGCTAAGGAAGACGACGGAAGTGCGAAGAAGGGGTTTAGGAGGACTGGGAAAGGG 180
Query 201 AAATTGACGGCTGAAGCTGTCTCTGAGGCGATTAATAGAGCAGCTCAGGGTTTGCCGTTT 260
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 AAATTGACGGCTGAAGCTGTCTCTGAGGCGATTAATAGAGCAGCTCAGGGTTTGCCGTTT 240
Query 261 GAGGTGGTTTATTATCCTACGGCTGGATGGTCGTACTTTGTGGTGAAGGCAGAAGATGTT 320
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 241 GAGGTGGTTTATTATCCTACGGCTGGATGGTCGGACTTTGTGGTGAAGGCAGAAGATGTT 300
Query 321 GAGGCTTCCATGGCTATATTCTGGACTCCTGGTACTAGAGTGAAGATGGCCATGGAGACT 380
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 GAGGCTTCCATGGCTATATTCTGGACTCCTGGTACTAGAGTGAAGATGGCCATGGAGACT 360
Query 381 GAGGACTCTTCGCGGATTACTTGGTTTCAGGGGATTGTCTTCTCTACATATCAGGAAACT 440
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 361 GAGGACTCTTCGCGGATTACTTGGTTTCAGGGGATTGTCTTCTATACATATCAGGAAACT 420
Query 441 GGTCCATGGCGTGGATCTCCTTGGAAACAGCTTCAGGTATAAGATCCCCTTCACTATTCC 500
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 421 GGTCCATGGCGTGGATCTCCTTGGAA-CAGCTTCAGGTATAAGATCCCCTTCACTATTCC 479
Query 501 CT 502
||
Sbjct 480 CT 481
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 23961688119
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5