BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg931008
Length=780
Score E
Sequences producing significant alignments: (Bits) Value
AT2G07678.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 1336 0.0
ATMG00920.1 | Symbols: ORF215B | hypothetical protein | chrM:24... 1168 0.0
> AT2G07678.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:ATMG00920.1);
Has 13 Blast hits to 13 proteins in 2 species: Archae - 0;
Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 13; Viruses
- 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr2:3281097-3281834
FORWARD LENGTH=738
Length=738
Score = 1336 bits (723), Expect = 0.0
Identities = 733/738 (99%), Gaps = 0/738 (0%)
Strand=Plus/Plus
Query 23 ATGAAAATTAAATCTCCTTTATTTAGAGGACCACTGGTCAACAGTTCCACAGAAAATCCA 82
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGAAAATGAAATCTCCTTTATTTAGAGGACCACTGGTCAACAGTTCCACAGAAAATCCA 60
Query 83 ATTCATATCCTAACGCGAGAGAAATTGAGACATCAGACCAGTGGTACAAACTCAACAGAG 142
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 ATTCATATCCTAACGCGAGAGAAATTGAGACATCAGACCAGTGGTACAAACTCAACAGAG 120
Query 143 AAAGTAATACTACCTAATATACTTCATAGTTATATCAAAAACCTAAACTTAGATTTCACA 202
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 AAAGTAATACTACCTAATATACTTCATAGTTATATCAAAAACCTAAACTTAGATTTCACA 180
Query 203 TCACCATATGGATCAACTGGTAATAATGAATTATTAAGCATACTTCGTAGTAGGTTTAAA 262
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 181 TCACCATATGGATCAACTGGTAATAATGAAGTATTAAGCATACTTCGTAGTAGGTTTAAA 240
Query 263 CAAAGCATTTTCCCATCATCTGGATTAAAGTGTTTGGATACTACTGGTGATTTTCTCATC 322
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 CAAAGCATTTTCCCATCATCTGGATTAAAGTGTTTGGATACTACTGGTGATTTTCTCATC 300
Query 323 AAAAATGTTTTACATAAAAGATATGAAAGTGTTCAGCAGAATATCTCAAATGCATTATCA 382
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 301 AAAAATGTTTTACATAAAAGATATGAAAGTGTTCAGAAGAATATCTCAAATGCATTATCA 360
Query 383 TCCTCCATAAATTCTCGCACTGCAGTCTTCTTTTGTATACTGTTCAGTATAACAGTGTTA 442
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 TCCTCCATAAATTCTCGCACTGCAGTCTTCTTTTGTATACTGTTCAGTATAACAGTGTTA 420
Query 443 ATGGAAATAGCTCCTGGACCTCTTTTGAACAAACCTTCATTATTATTTTCAGATAATTTA 502
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 421 ATGGAAATAGCTCCTGGACCTCTTTTGAAGAAACCTTCATTATTATTTTCAGATAATTTA 480
Query 503 CCAAATGTATTGCAATATACACGAGATGTGTATGTGAATCATGTTTGTATAATACACAAA 562
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 CCAAATGTATTGCAATATACACGAGATGTGTATGTGAATCATGTTTGTATAATACACAAA 540
Query 563 AGTTTAAGTCCATGTGAGTGCGAGGAGCCTCTCAATCGAATTATTAGAGATATGTTTCCG 622
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 AGTTTAAGTCCATGTGAGTGCGAGGAGCCTCTCAATCGAATTATTAGAGATATGTTTCCG 600
Query 623 CAAACCACTTTTGACCCACTTGAACTACAGAAACCTTCACCCAGTAAAGTGAAAACTATA 682
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 CAAACCACTTTTGACCCACTTGAACTACAGAAACCTTCACCCAGTAAAGTGAAAACTATA 660
Query 683 ACCTACATGCTTGGTACTATTCTTCTTGTAATTACATTAATGGATAAGACTGGATACACT 742
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 ACCTACATGCTTGGTACTATTCTTCTTGTAATTACATTAATGGATAAGACTGGATACACT 720
Query 743 CAATTAGTTCAAATGTAG 760
||||||||| ||||||||
Sbjct 721 CAATTAGTTAAAATGTAG 738
> ATMG00920.1 | Symbols: ORF215B | hypothetical protein | chrM:249272-249919
REVERSE LENGTH=648
Length=648
Score = 1168 bits (632), Expect = 0.0
Identities = 643/648 (99%), Gaps = 1/648 (0%)
Strand=Plus/Plus
Query 23 ATGAAAATTAAATCTCCTTTATTTAGAGGACCACTGGTCAACAGTTCCACAGAAAATCCA 82
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGAAAATGAAATCTCCTTTATTTAGAGGACCACTGGTCAACAGTTCCACAGAAAATCCA 60
Query 83 ATTCATATCCTAACGCGAGAGAAATTGAGACATCAGACCAGTGGTACAAACTCAACAGAG 142
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 ATTCATATCCTAACGCGAGAGAAATTGAGACATCAGACCAGTGGTACAAACTCAACAGAG 120
Query 143 AAAGTAATACTACCTAATATACTTCATAGTTATATCAAAAACCTAAACTTAGATTTCACA 202
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 AAAGTAATACTACCTAATATACTTCATAGTTATATCAAAAACCTAAACTTAGATTTCACA 180
Query 203 TCACCATATGGATCAACTGGTAATAATGAATTATTAAGCATACTTCGTAGTAGGTTTAAA 262
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 181 TCACCATATGGATCAACTGGTAATAATGAAGTATTAAGCATACTTCGTAGTAGGTTTAAA 240
Query 263 CAAAGCATTTTCCCATCATCTGGATTAAAGTGTTTGGATACTACTGGTGATTTTCTCATC 322
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 CAAAGCATTTTCCCATCATCTGGATTAAAGTGTTTGGATACTACTGGTGATTTTCTCATC 300
Query 323 AAAAATGTTTTACATAAAAGATATGAAAGTGTTCAGCAGAATATCTCAAATGCATTATCA 382
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 301 AAAAATGTTTTACATAAAAGATATGAAAGTGTTCAGAAGAATATCTCAAATGCATTATCA 360
Query 383 TCCTCCATAAATTCTCGCACTGCAGTCTTCTTTTGTATACTGTTCAGTATAACAGTGTTA 442
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 TCCTCCATAAATTCTCGCACTGCAGTCTTCTTTTGTATACTGTTCAGTATAACAGTGTTA 420
Query 443 ATGGAAATAGCTCCTGGACCTCTTTTGAACAAACCTTCATTATTATTTTCAGATAATTTA 502
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 421 ATGGAAATAGCTCCTGGACCTCTTTTGAAGAAACCTTCATTATTATTTTCAGATAATTTA 480
Query 503 CCAAATGTATTGCAATATACACGAGATGTGTATGTGAATCATGTTTGTATAATACACAAA 562
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 CCAAATGTATTGCAATATACACGAGATGTGTATGTGAATCATGTTTGTATAATACACAAA 540
Query 563 AGTTTAAGTCCATGTGAGTGCGAGGAGCCTCTCAATCGAATTATTAGAGATATGTTTCCG 622
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 AGTTTAAGTCCATGTGAGTGCGAGGAGCCTCTCAATCGAATTATTAGAGATATGTTTCCG 600
Query 623 CAAACCACTTTTGACCCACTTGAACTACAGAAACCTTCACCC-AGTAA 669
|||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 601 CAAACCACTTTTGACCCACTTGAACTACAGAAACCTTCACCCCAGTAA 648
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37926780985
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5