BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg931009

Length=622
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G07669.1 | Symbols:  | unknown protein; Has 35333 Blast hits...   610    5e-174


> AT2G07669.1 | Symbols:  | unknown protein; Has 35333 Blast hits 
to 34131 proteins in 2444 species: Archae - 798; Bacteria 
- 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses 
- 0; Other Eukaryotes - 9610 (source: NCBI BLink). | chr2:3283224-3283553 
FORWARD LENGTH=330
Length=330

 Score =  610 bits (330),  Expect = 5e-174
 Identities = 330/330 (100%), Gaps = 0/330 (0%)
 Strand=Plus/Plus

Query  36   ATGGCGGGGCCCGGGATCCCTTGCTGCTGCGGTAAAAGAGTCTTCCTTCTTCTGGGCGGA  95
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1    ATGGCGGGGCCCGGGATCCCTTGCTGCTGCGGTAAAAGAGTCTTCCTTCTTCTGGGCGGA  60

Query  96   ATGTGTATGAGTAGGCGTGAAGTAGGCGAAGCAGTCCTCCCGTTGATACGTGGGATAGGA  155
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  61   ATGTGTATGAGTAGGCGTGAAGTAGGCGAAGCAGTCCTCCCGTTGATACGTGGGATAGGA  120

Query  156  GAAGGGGTCTACCACTTTATATCACTAAGTTCCCCCTCTCCGTCTTGCAGGTATTGTTTC  215
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  121  GAAGGGGTCTACCACTTTATATCACTAAGTTCCCCCTCTCCGTCTTGCAGGTATTGTTTC  180

Query  216  TGGGTTGTGTCTGCTTCCCGCTGTGCAGCTTCCACTTCCTTTCTTTGTTCTCTGGGAATA  275
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  181  TGGGTTGTGTCTGCTTCCCGCTGTGCAGCTTCCACTTCCTTTCTTTGTTCTCTGGGAATA  240

Query  276  AGTAGCATGAAGAGTTCATCTGTTGTCCGTAGGTCCCTGGCTGAGTTATCATGTGTAGCT  335
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  241  AGTAGCATGAAGAGTTCATCTGTTGTCCGTAGGTCCCTGGCTGAGTTATCATGTGTAGCT  300

Query  336  AAGTACGATCTGCGTTCTGCTGTCAGTTAA  365
            ||||||||||||||||||||||||||||||
Sbjct  301  AAGTACGATCTGCGTTCTGCTGTCAGTTAA  330



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 29989785759


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5