BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg931012

Length=263
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G07681.1 | Symbols:  | Cytochrome C assembly protein | chr2:...   121    4e-27


> AT2G07681.1 | Symbols:  | Cytochrome C assembly protein | chr2:3287552-3292366 
FORWARD LENGTH=2291
Length=2291

 Score =  121 bits (65),  Expect = 4e-27
 Identities = 88/97 (91%), Gaps = 9/97 (9%)
 Strand=Plus/Minus

Query  131   CTTTAAATGAAAGCTTTCACCCTCTCCCTCATCTGCATCCAAACCATTTCGACCGGAGCG  190
             ||||||||||||||||||||||||||||||||||||||||  |  |     |||||||||
Sbjct  2189  CTTTAAATGAAAGCTTTCACCCTCTCCCTCATCTGCATCC--A--A-----ACCGGAGCG  2139

Query  191   ACTTTGTTCAATCGCTTTTGCACTTTTTTCTCTGCCT  227
             |||||||||||||||||||||||||||||||||||||
Sbjct  2138  ACTTTGTTCAATCGCTTTTGCACTTTTTTCTCTGCCT  2102



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 12013992011


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5