BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg931018
Length=1184
Score E
Sequences producing significant alignments: (Bits) Value
AT2G07783.1 | Symbols: | pseudogene, similar to Ccl1, blastp m... 2097 0.0
ATMG00830.1 | Symbols: CCB382 | cytochrome C biogenesis 382 | c... 2074 0.0
> AT2G07783.1 | Symbols: | pseudogene, similar to Ccl1, blastp
match of 86% identity and 6.4e-177 P-value to GP|1694629|dbj|BAA12329.1||D84373
Ccl1 {Brassica napus} | chr2:3297896-3300043
FORWARD LENGTH=2148
Length=2148
Score = 2097 bits (1135), Expect = 0.0
Identities = 1154/1163 (99%), Gaps = 2/1163 (0%)
Strand=Plus/Plus
Query 24 TCAATATATGAATTCTTTCATTATTCGTTATTTCCGGGTCTTTTCGTTGCATTCACTTAC 83
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 4 TCAATATATGAATTCTTTCATTATTCGTTATTTCCGGGTCTTTTTGTTGCATTCACTTAC 63
Query 84 AACAAGAAACAACCACCAGCGTTTGGTGCAGCACCTGCATTTTGGTGCATTCTTCTTTCT 143
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 64 AACAAGAAACAACCACCAGCGTTTGGTGCAGCACCTGCATTTTGGTGCATTCTTCTTTCT 123
Query 144 TTCCTTGGTCTTTTGTTCTGTCATATTTCTAATAACTTATCCAATTACAACGTATTAACC 203
||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 124 TTCCTTGGTCTTTCGTTCTGTCATATTCCTAATAACTTATCCAATTACAACGTATTAACC 183
Query 204 GCTAATGCACCTTTCTTTTATCAAATCTCAGGAACATGGTCTAATCATGAGGGTAGTATT 263
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 184 GCTAATGCACCTTTCTTTTATCAAATCTCAGGAACATGGTCTAATCATGAGGGTAGTATT 243
Query 264 TTATTATGGTGTCGGATCCCAAATTTTTATGGATTTTTTCTTTGTTACCGGGGTCGACCC 323
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 244 TTATTATGGTGTCGGATCCCAAATTTTTATGGATTTTTTCTTTGTTACCGGGGTCGACCC 303
Query 324 CAAAGCCATAATGTCTTAAAACAAGGAGGCCATAGGGAAAGTCttttttttttttttGTC 383
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 304 CAGAGCCATAATGTCTTAAAACAAGGAGGCCATAGGGAAAGTCTTTTTTTTTTTTTTGTC 363
Query 384 TCGAACTTCGTGAAGAACTCAATTTTATCTCTCCCTCGTTACGAACAAGAAAGTGGTTTG 443
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 364 TCGAACTTCGTGAAGAACTCAATTTTATCTCTCCCTCGTTACGAACAAGAAAGTGGTTTG 423
Query 444 AAAAACCAGTTGTACACTCCCTTCGTTCTACGAACCCTTGTTGATTCTGAACTTCGTTCG 503
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 424 AAAAACCAGTTGTACACTCCCTTCGTTCTACGAACCCTTGTTGATTCTGAACTTCGTTCG 483
Query 504 CGAAGGAACCGGACTTTTGACGGACCAGCCCTTTTTTATGCGCCGCTTTATCCTGAAAGG 563
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 484 CGAAGGAACCGGACTTTTGACGGACCAGCCCTTTTTTATGCGCCGCTTTATCCTGAAAGG 543
Query 564 AAAATGAAAAATCCTCTGGACGCTTGGCGCTCCCGTGGTTCGCGAGAAGGAAAAAGGACT 623
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 544 AAAATTAAAAATCCTCTGGACGCTTGGCGCTCCCGTGGTTCGCGAGAAGGAAAAAGGACT 603
Query 624 CATCCTTTGTTGCATCTGGCACGAGATGATAAAGAGAGAGCTTCGTCTATCGATGAACAG 683
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 604 CATCCTTTGTTGCATCTGGCACGAGATGATAAAGAGAGAGCTTCGTCTATCGATGAACAG 663
Query 684 CGAATTGACGGAGCTCTTGGCATTGCTTTGTTTTTCTCTCCTTTCCTATCAGCGAGTTCC 743
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 664 CGAATTGACGGAGCTCTTGGCATTGCTTTGTTTTTCTCTCCTTTCCTATCAGCGAGTTCC 723
Query 744 GATCCTTTTGTTCGAAATTTCTTTGTTTGTACCGAACCGCTTGCAGAATCAAATCCTGTT 803
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 724 GATCCTTTTGTTCGAAATTTCTTTGTTTGTACCGAACCGCTTGCAGAATCAAATCCTGTT 783
Query 804 CCACAAGATCCTATATCAGCTATACATCCTCCTTGCATTTATGCCGGGGACGTCGCCAGT 863
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 784 CCACAAGATCCTATATCAGCTATACATCCTCCTTGCATTTATGCCGGGGACGTCGCCAGT 843
Query 864 GCGGAGGGCTTTGGCTTATGTAGATCAAAAATGATGAATGGGATTGTGGCACTCCACTCG 923
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 844 GCGGAGGGCTTTGGCTTATGTAGATCAAAAATGATGAATGGGATTGTGGCACTCCACTCG 903
Query 924 CCGCCAATGCGGAAGGATGCCGCCGAAAAGAATGGAACGCTGCTTTGCTCTGCTGGATGC 983
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 904 CCGCCAATGCGGAAGGATGCCGCCGAAAAGAATGGAACGCTGCTTCGCTCTGCTGGATGC 963
Query 984 GTCGGATCCCGTATAACAAGCGAGCTTTTTACCCTAAAATTCAAACATGTGGGCGCAAAA 1043
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 964 GTCGGATCCCGTATAACAAGCGAGCTTTTTACCCTAAAATTCAAACATGTGGGCGCAAAA 1023
Query 1044 TGCTATCCTGCTCTATTGTTACGTAGCAATAGAAGCCCGCTCATGCTGCTTCGGCGGCGC 1103
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1024 TGCTATCCTGCTCTATTGTTACGTAGCAATAGAAGCCCGCTCATGCTGCTTCGGCGGCGC 1083
Query 1104 TTTTTCGCCTTCTCTTCGTTCTGGACAGGAGCGAGAAGCCACTCGACTAAAAGGTACTGA 1163
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1084 TTTTTCGCCTTCTCTTCGTTCTGGGCAGGAGCGAGAAGCCACTCGACTAAAAGGTACTGA 1143
Query 1164 CGTAACTC--AACTaaaaaaaGG 1184
|||||||| |||||||||||||
Sbjct 1144 CGTAACTCTCAACTAAAAAAAGG 1166
> ATMG00830.1 | Symbols: CCB382 | cytochrome C biogenesis 382 |
chrM:231894-233042 REVERSE LENGTH=1149
Length=1149
Score = 2074 bits (1123), Expect = 0.0
Identities = 1137/1144 (99%), Gaps = 0/1144 (0%)
Strand=Plus/Plus
Query 20 AATGTCAATATATGAATTCTTTCATTATTCGTTATTTCCGGGTCTTTTCGTTGCATTCAC 79
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 6 AATATCAATATATGAATTCTTTCATTATTCGTTATTTCCGGGTCTTTTCGTTGCATTCAC 65
Query 80 TTACAACAAGAAACAACCACCAGCGTTTGGTGCAGCACCTGCATTTTGGTGCATTCTTCT 139
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 66 TTACAACAAGAAACAACCACCAGCGTTTGGTGCAGCACCTGCATTTTGGTGCATTCTTCT 125
Query 140 TTCTTTCCTTGGTCTTTTGTTCTGTCATATTTCTAATAACTTATCCAATTACAACGTATT 199
||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||
Sbjct 126 TTCTTTCCTTGGTCTTTCGTTCTGTCATATTCCTAATAACTTATCCAATTACAACGTATT 185
Query 200 AACCGCTAATGCACCTTTCTTTTATCAAATCTCAGGAACATGGTCTAATCATGAGGGTAG 259
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 186 AACCGCTAATGCACCTTTCTTTTATCAAATCTCAGGAACATGGTCTAATCATGAGGGTAG 245
Query 260 TATTTTATTATGGTGTCGGATCCCAAATTTTTATGGATTTTTTCTTTGTTACCGGGGTCG 319
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 246 TATTTTATTATGGTGTCGGATCCCAAATTTTTATGGATTTTTTCTTTGTTACCGGGGTCG 305
Query 320 ACCCCAAAGCCATAATGTCTTAAAACAAGGAGGCCATAGGGAAAGTCttttttttttttt 379
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 306 ACCCCAGAGCCATAATGTCTTAAAACAAGGAGGCCATAGGGAAAGTCTTTTTTTTTTTTT 365
Query 380 tGTCTCGAACTTCGTGAAGAACTCAATTTTATCTCTCCCTCGTTACGAACAAGAAAGTGG 439
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 366 TGTCTCGAACTTCGTGAAGAACTCAATTTTATCTCTCCCTCGTTACGAACAAGAAAGTGG 425
Query 440 TTTGAAAAACCAGTTGTACACTCCCTTCGTTCTACGAACCCTTGTTGATTCTGAACTTCG 499
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 426 TTTGAAAAACCAGTTGTACACTCCCTTCGTTCTACGAACCCTTGTTGATTCTGAACTTCG 485
Query 500 TTCGCGAAGGAACCGGACTTTTGACGGACCAGCCCTTTTTTATGCGCCGCTTTATCCTGA 559
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 486 TTCGCGAAGGAACCGGACTTTTGACGGACCAGCCCTTTTTTATGCGCCGCTTTATCCTGA 545
Query 560 AAGGAAAATGAAAAATCCTCTGGACGCTTGGCGCTCCCGTGGTTCGCGAGAAGGAAAAAG 619
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 546 AAGGAAAATTAAAAATCCTCTGGACGCTTGGCGCTCCCGTGGTTCGCGAGAAGGAAAAAG 605
Query 620 GACTCATCCTTTGTTGCATCTGGCACGAGATGATAAAGAGAGAGCTTCGTCTATCGATGA 679
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 606 GACTCATCCTTTGTTGCATCTGGCACGAGATGATAAAGAGAGAGCTTCGTCTATCGATGA 665
Query 680 ACAGCGAATTGACGGAGCTCTTGGCATTGCTTTGTTTTTCTCTCCTTTCCTATCAGCGAG 739
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 666 ACAGCGAATTGACGGAGCTCTTGGCATTGCTTTGTTTTTCTCTCCTTTCCTATCAGCGAG 725
Query 740 TTCCGATCCTTTTGTTCGAAATTTCTTTGTTTGTACCGAACCGCTTGCAGAATCAAATCC 799
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 726 TTCCGATCCTTTTGTTCGAAATTTCTTTGTTTGTACCGAACCGCTTGCAGAATCAAATCC 785
Query 800 TGTTCCACAAGATCCTATATCAGCTATACATCCTCCTTGCATTTATGCCGGGGACGTCGC 859
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 786 TGTTCCACAAGATCCTATATCAGCTATACATCCTCCTTGCATTTATGCCGGGGACGTCGC 845
Query 860 CAGTGCGGAGGGCTTTGGCTTATGTAGATCAAAAATGATGAATGGGATTGTGGCACTCCA 919
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 846 CAGTGCGGAGGGCTTTGGCTTATGTAGATCAAAAATGATGAATGGGATTGTGGCACTCCA 905
Query 920 CTCGCCGCCAATGCGGAAGGATGCCGCCGAAAAGAATGGAACGCTGCTTTGCTCTGCTGG 979
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 906 CTCGCCGCCAATGCGGAAGGATGCCGCCGAAAAGAATGGAACGCTGCTTCGCTCTGCTGG 965
Query 980 ATGCGTCGGATCCCGTATAACAAGCGAGCTTTTTACCCTAAAATTCAAACATGTGGGCGC 1039
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 966 ATGCGTCGGATCCCGTATAACAAGCGAGCTTTTTACCCTAAAATTCAAACATGTGGGCGC 1025
Query 1040 AAAATGCTATCCTGCTCTATTGTTACGTAGCAATAGAAGCCCGCTCATGCTGCTTCGGCG 1099
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1026 AAAATGCTATCCTGCTCTATTGTTACGTAGCAATAGAAGCCCGCTCATGCTGCTTCGGCG 1085
Query 1100 GCGCTTTTTCGCCTTCTCTTCGTTCTGGACAGGAGCGAGAAGCCACTCGACTAAAAGGTA 1159
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1086 GCGCTTTTTCGCCTTCTCTTCGTTCTGGGCAGGAGCGAGAAGCCACTCGACTAAAAGGTA 1145
Query 1160 CTGA 1163
||||
Sbjct 1146 CTGA 1149
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58132231110
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5