BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg931035
Length=1441
Score E
Sequences producing significant alignments: (Bits) Value
AT2G11810.1 | Symbols: MGDC, MGD3, ATMGD3 | monogalactosyldiacy... 2196 0.0
AT5G20410.1 | Symbols: MGD2, ATMGD2 | monogalactosyldiacylglyce... 564 9e-160
> AT2G11810.1 | Symbols: MGDC, MGD3, ATMGD3 | monogalactosyldiacylglycerol
synthase type C | chr2:4743322-4746780 FORWARD LENGTH=1611
Length=1611
Score = 2196 bits (1189), Expect = 0.0
Identities = 1359/1442 (94%), Gaps = 8/1442 (1%)
Strand=Plus/Plus
Query 1 TTCTTCAACACCAAATAGTCATGATGAAAGTGGTGTCACCTCGTACAAGGTCGGATTCAA 60
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 47 TTCTTCAACACCAAATAGTCATGATGAAAGTGGTGTCACCTCGTACACGGTCGGATTCAA 106
Query 61 TCACTGAGAAGGTGTTCCGACGAGTCTATAGCAATTTTAATATCTCAACGGTCGAAGATG 120
|||||||||||||||| ||||||||||||||||||||||| |||||||| || |||||||
Sbjct 107 TCACTGAGAAGGTGTTTCGACGAGTCTATAGCAATTTTAACATCTCAACAGTAGAAGATG 166
Query 121 AGTATATCCATCGTCAGAGATCAAGTGATTACGAGAAGGAGAGTCGTCTAAGGAAGAGAG 180
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 167 AGTATATCCATCGTCAGAGATCAAGTGATTATGAGAAGGAGAGTCGTCTAAGGAAGAGAG 226
Query 181 GATTAGAAGAAAAAGAAGAAGTTATGGAGATGGAGCAGATGGGAGCAGAGAGGATCAAAA 240
| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 227 GGTTAGAAGACAAAGAAGAAGTTATGGAGATGGAGCAGATGGGAGCAGAGAGGATCAAAA 286
Query 241 CTGTTCTTATTCTCATGAGTGACACCGGCGGCGGCCACCGTGCTTCCGCCGAGGCCATCC 300
|||||||||||||||||||||| |||||||| |||||||||||||| |||||||||||||
Sbjct 287 CTGTTCTTATTCTCATGAGTGATACCGGCGGTGGCCACCGTGCTTCAGCCGAGGCCATCC 346
Query 301 GTGACGCTTTCAAGATCGAATTCGGAGATGACTATCGGATAATCATAAAAGATGTATGGA 360
| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 347 GCGACGCTTTCAAGATCGAATTCGGAGATGACTATCGGATAATCATAAAAGATGTTTGGA 406
Query 361 AAGAATACACTGGATGGCCATTGAACGACATGGAGAGACAGTACAAGTTCATGGTAAAAC 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 407 AAGAATACACTGGATGGCCATTGAACGACATGGAGAGACAGTACAAGTTCATGGTGAAAC 466
Query 421 ATGTTGGTCTTTGGTCAGTCGCGTTTCATGGTACCTCTCCCAAATGGATACACAAAAGTT 480
|||||||||||||||| || |||||||||||||| |||||||||||||| |||||||| |
Sbjct 467 ATGTTGGTCTTTGGTCTGTTGCGTTTCATGGTACTTCTCCCAAATGGATCCACAAAAGCT 526
Query 481 ATCTAAGTGCTCTCGCCGCTTATTATGCCAAAGAAATAGAGGCTGGTTTAATGGAGTACA 540
||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 527 ATCTAAGTGCTCTTGCCGCTTATTATGCCAAAGAAATAGAGGCCGGTTTAATGGAGTACA 586
Query 541 AACCAGATATCATTGTTAGCGTACACCCTTTGATGCAACACATACCATTGTGGGTAATGA 600
|||| || || ||| ||||||| || ||| ||||||||||||||||||||||||||||||
Sbjct 587 AACCGGACATTATTATTAGCGTGCATCCTCTGATGCAACACATACCATTGTGGGTAATGA 646
Query 601 AATGGCAAGGACTTCATAAGAAAGTCATTTTCGTGACGGTCATAACTGATCTAAATACTT 660
|||||||||||||||| |||||||| |||||||| |||||||| ||||||||||| ||||
Sbjct 647 AATGGCAAGGACTTCACAAGAAAGTTATTTTCGTTACGGTCATCACTGATCTAAACACTT 706
Query 661 GCCACCGTACATGGTTCCATCATGGAGTCAGCAGATGTTATTGTCCGTCGAAAGAGGTTG 720
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 707 GCCACCGTACATGGTTCCATCATGGAGTCAGCAGATGTTATTGTCCGTCCAAAGAGGTTG 766
Query 721 CAAAGAGAGCATTAGTAGACGGCCTTGATGACTCTCAAATTCGTGTCTTTGGCTTACCCG 780
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
Sbjct 767 CAAAGAGAGCATTAGTAGACGGCCTTGATGACTCTCAAATCCGTGTCTTTGGCTTACCTG 826
Query 781 TCCGCCCATCTTTCCCTCGTACAATTATCTACAAGGATGAACTAAGGAGAG-AGCTTGAA 839
||||||||||||||||||| || ||| || ||||| |||||||||||| || | ||||||
Sbjct 827 TCCGCCCATCTTTCCCTCGCACTATTCTCAACAAGAATGAACTAAGGA-AGGAACTTGAA 885
Query 840 ATAGACTTAAATTTACCTGCGGTTCTATTAATGGGAGGCGGTGAAGGAATGGGTCCGGTT 899
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 886 ATAGACTTAAATTTACCTGCGGTTCTATTAATGGGAGGGGGTGAAGGAATGGGTCCGGTT 945
Query 900 CAAAAAACTGCTCTAGCCCTTGGAGATGCTTTATACAACTCTAAAGAAAGAAATCCAATA 959
|||||||| |||||||||||||||||| |||||||||||||||||||||| |||||||||
Sbjct 946 CAAAAAACAGCTCTAGCCCTTGGAGATTCTTTATACAACTCTAAAGAAAGTAATCCAATA 1005
Query 960 GGACAATTGATTGTCATATGCGGCCGGAACAAAGTCCTTGCTTC-AGCATTAGGGTCCCA 1018
|||||||||||||||||||||||||||||||||||||||||||| | |||||| || ||
Sbjct 1006 GGACAATTGATTGTCATATGCGGCCGGAACAAAGTCCTTGCTTCTA-CATTAGCATCTCA 1064
Query 1019 TGAATGGAAGATTCCAGTCAAGGTTCGTGGGTTTGAAACACAAATGGAAAAATGGATGGG 1078
||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1065 TGAATGGAAGATTCCGGTCAAGGTTCGAGGGTTTGAAACACAAATGGAAAAATGGATGGG 1124
Query 1079 AGCTTGTGATTGTATCATCACAAAGGCCGGTCCAGGTACGATTGCAGAAGCATTGATTTG 1138
||||||||||||||||||||| ||||| ||||| ||||||||||| |||||| |||||||
Sbjct 1125 AGCTTGTGATTGTATCATCACTAAGGCTGGTCCGGGTACGATTGCGGAAGCACTGATTTG 1184
Query 1139 TGGTCTCCCAATTATCCTCAATGACTATATTCCTGGACAGGAAAAAGGCAATGTGCCTTA 1198
|| ||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct 1185 CGGCCTCCCAATTATCCTCAATGACTATATTCCTGGACAGGAAAAAGGCAACGTGCCGTA 1244
Query 1199 TGTTGTGGACAATGGAGCTGGAGTTTTCACCCGAAGTCCCAAAGAAACTGCGAAAATTGT 1258
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1245 TGTTGTGGACAATGGGGCTGGAGTTTTCACCCGAAGTCCCAAAGAAACTGCGAAAATCGT 1304
Query 1259 GGCTAATTGGTTTAGCAACAATAAAGAGGAACTAAAGAAAATGTCAGAGAATGCTCTAAA 1318
||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1305 GGCGGATTGGTTTAGCAACAATAAAGAGGAATTAAAGAAAATGTCAGAGAATGCTCTAAA 1364
Query 1319 GTTGGCCCAACCTGAGGCCGTGTTCGACATCGTGAAAGATATCCATCATCTATCCCAACA 1378
|||| | |||||||| |||||||||||||| ||||| |||||||||||||||||||||||
Sbjct 1365 GTTGTCGCAACCTGAAGCCGTGTTCGACATTGTGAAGGATATCCATCATCTATCCCAACA 1424
Query 1379 ACAACAACAACGTATTCCACTTTTTAATGATTTTTCGTATTGACGTCTTCTTTGTT-AGA 1437
|||||||| ||||||||||||||||||| ||||| |||||| || || |||||| |||
Sbjct 1425 ACAACAAC---GTATTCCACTTTTTAATGAATTTTCCTATTGAAGTGTTGTTTGTTTAGA 1481
Query 1438 CT 1439
||
Sbjct 1482 CT 1483
> AT5G20410.1 | Symbols: MGD2, ATMGD2 | monogalactosyldiacylglycerol
synthase 2 | chr5:6896576-6898783 FORWARD LENGTH=1798
Length=1798
Score = 564 bits (305), Expect = 9e-160
Identities = 894/1173 (76%), Gaps = 62/1173 (5%)
Strand=Plus/Plus
Query 216 CAGATGGGAGCAGAGAGGATC-AA-AACTGTTCTT-ATTCTCATGAGTGACACCGGCGGC 272
||||| || || ||||||| | || ||| | |||| || |||||||| || || || |||
Sbjct 373 CAGATCGGTGCTGAGAGGA-CTAAGAAC-G-TCTTGATCCTCATGAGCGATACTGGTGGC 429
Query 273 GGCCACCGTGCTTCCGCCGAGGCCATCCGTGACGCTTTCAAGATCGAATTCGGAGATGAC 332
|| |||||||||||||| || ||||| ||||||||||||||||||||||||||||| |
Sbjct 430 GGTCACCGTGCTTCCGCTGAAGCCATTCGTGACGCTTTCAAGATCGAATTCGGAGACAAA 489
Query 333 TATCG-GATAATCATAAAAGATGTATGGAAAGAATACACTGGATGGCCATTGAACGACAT 391
||| | | |||| | || ||||| ||||| |||||||| || ||||||||||| || ||
Sbjct 490 TATAGAG-TAATTGTGAAGGATGTGTGGAAGGAATACACAGGGTGGCCATTGAATGATAT 548
Query 392 GGAGAGA-CAGTACAAGTTCATGGTAAAACATGTTG-GTCTTTGGTCAGTCGCGTTTCAT 449
||||||| || || ||||||||||| || |||||| | || ||| ||| || |||||
Sbjct 549 GGAGAGATCA-TATAAGTTCATGGTGAAGCATGTTCAG-CTATGGAAAGTTGCTTTTCAC 606
Query 450 GGTACCTCTCCCAAATGGATACACAAAAGTTATCTAAGT-GCTC-TCGCCGCTTATTATG 507
| || || ||||||||||| ||| |||||||| | || | | || |||||||| |
Sbjct 607 AGCACATCACCCAAATGGATCCACTCTTGTTATCTA-GCAGC-CATTGCTGCTTATTACG 664
Query 508 CCAAAGAAATAGAGGCTGGTTTAATGGAGTACAAACCAGATATCATTGTTAGCGTACACC 567
| || ||| |||||||||||||||||||||| || || || || || |||| || || |
Sbjct 665 CTAAGGAAGTAGAGGCTGGTTTAATGGAGTATAAGCCGGAGATAATCATTAGTGTTCATC 724
Query 568 CTTTGATGCAACACATACCATTGTGGGTAATGAAATGGCAAG-GACTTCATAAGAAAGTC 626
|||| |||||||| || ||||||||||| | |||||||||| | || || |||| ||||
Sbjct 725 CTTTAATGCAACATATTCCATTGTGGGTTCTTAAATGGCAAGAG-CTACAAAAGAGAGTC 783
Query 627 ATTTTCGTGACGGTCATAACTGATCTAAATACTTGCCA-CCGTACATGGTTCCATCATGG 685
|||| || || ||||| |||||||| || ||||| || || ||| ||||| |||| ||
Sbjct 784 CTTTTTGTTACTGTCATTACTGATCTCAACACTTGTCATCC-TACTTGGTTTCATCCGGG 842
Query 686 AGTCAGCAGATGTTATTGTCCGTCGAAAGAGGTTGC-AAAGAGAGCATTAGTA-GACGGC 743
|| | || || ||||| ||||| |||| || || ||| || || || || || ||
Sbjct 843 GGTGAATAGGTGCTATTGCCCGTCTCAAGAAGTGGCGAAA-AGGGCGTT-GTTTGATGGG 900
Query 744 CTTGATGACTCTCAAATTCGTGTCTTTGGCTTACCCGTCCGCCCATCTTTCCCTCGTA-C 802
|||||||| |||||| | ||||||||||| ||||| || | |||||||| | || | |
Sbjct 901 CTTGATGAGTCTCAAGTCCGTGTCTTTGGTTTACCTGTGAGGCCATCTTTTGCACG-AGC 959
Query 803 AATTATC-TACAAGGATGAACTAAGGAGAG-AGCTTGAAATAGACTTAA-AT-TTACCTG 858
|| | | |||||||| ||||| | || ||||||| || || | || || || | ||
Sbjct 960 GGTTTTGGTG-AAGGATGATCTAAGAA-AGGAGCTTGAGATGGA-TCAAGATCTT-CGTG 1015
Query 859 CGGTTCTATTAATGGGAGGCGGTGAAGGAATGGGTCCGGTTCAAA-AAACTGCTCTAGCC 917
|||||||| | |||||||| || ||||| |||||||| || ||| |||| ||| |||
Sbjct 1016 CGGTTCTACTGATGGGAGGAGGGGAAGGTATGGGTCCTGTG-AAAGAAACAGCTAAAGCT 1074
Query 918 CTTGGAG-A-TGCTTTATACAACTCTAA-AGAA-AGAAATCCAATAGGACAATTGATTGT 973
|||| || | | ||| || | | || |||| || || || || || ||| || ||||
Sbjct 1075 CTTG-AGGAATT-TTTGTATGA-TA-AAGAGAACAGGAAGCCTATTGGGCAAATGGTTGT 1130
Query 974 CATATGCGGCCGGAACAAAGTCCTTG-CTTCAGCATTAGG-GTCCCAT-GAATGGAAGAT 1030
|| || || || ||||| | ||| | || ||||||| | || || || ||||||||
Sbjct 1131 TATCTGTGGACGTAACAA-GAAATTGGCATCTGCATTAGAAG-CC-ATTGACTGGAAGAT 1187
Query 1031 TCCAGTCAAGGTTCGTGGGTTTGAAACACAAATGGAAAAATGGATGGGAGCTTGTGATTG 1090
||| || |||||||| || ||||| || |||||||| |||||||||||||||||||| ||
Sbjct 1188 TCCTGTTAAGGTTCGAGGATTTGAGACTCAAATGGAGAAATGGATGGGAGCTTGTGACTG 1247
Query 1091 TATCATCACAAAGGCCGGTCCAGGTACGATTGCAGAAGCATTGATTTG-TGGTCTCCCAA 1149
||||||||||| || || ||||| || || || ||| | ||||| | | || || |
Sbjct 1248 CATCATCACAAAAGCTGGACCAGGAACAATCGCTGAATCGCTGATTCGATCA-CTTCCTA 1306
Query 1150 TTATCCTCAATGACTATATTCCTGGACAGGAAAAAGGCAATGTGCCTTATGTTGTGGACA 1209
| |||||||| || || |||||||||||||| ||||| |||||||| ||||| ||||| |
Sbjct 1307 TCATCCTCAACGATTACATTCCTGGACAGGAGAAAGGGAATGTGCCGTATGTAGTGGAGA 1366
Query 1210 ATGGAGCTGGAGTTTTCACCCGAAGTCCCAAAGAAACTGCGAAAATTGT-GGCTAATTGG 1268
|||| || ||||| ||||| ||||||||||||| || || | ||| || || ||| ||
Sbjct 1367 ATGGTGCAGGAGTATTCACAAGAAGTCCCAAAGAGACAGCTAGAATCGTTGGGGAAT-GG 1425
Query 1269 TTTAGCAACAATA-A-AGAGGAACTA-AAGAAAATGTCAGAGAATGCTC-TAAAGTTGGC 1324
||||||| ||| | | ||| || | || ||| | ||||| ||||| | |||| | | |
Sbjct 1426 TTTAGCA-CAA-AGACAGATGAGTTGGAACAAACT-TCAGACAATGCACGTAAACTAG-C 1481
Query 1325 CCAACCTGAGGCCGTGTTCGACATCGTGAAAGA 1357
|| |||||||| || |||||||| || |||||
Sbjct 1482 TCAGCCTGAGGCAGTCTTCGACATTGTCAAAGA 1514
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 71033771175
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5