BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg931036
Length=856
Score E
Sequences producing significant alignments: (Bits) Value
AT2G11890.1 | Symbols: | adenylate cyclases | chr2:4802793-480... 1260 0.0
> AT2G11890.1 | Symbols: | adenylate cyclases | chr2:4802793-4804358
FORWARD LENGTH=1068
Length=1068
Score = 1260 bits (682), Expect = 0.0
Identities = 793/845 (94%), Gaps = 14/845 (2%)
Strand=Plus/Plus
Query 1 TTGAGAAGAAAACCCACAAAAATCCAACTCAAAATCGAAGACCGTGAAGAGCTTGAACAA 60
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 4 TTGAGAAGAAAACCAACAAAAATCCAACTCAAAATCGAAGACCGTGAAGAGCTTGAACAA 63
Query 61 TCCCGCAAATCTCAaccatccaccaccacca-caac-cacc-gc-t-c-catccgcctcc 114
||||||||||||||||||||||||||||| | || | |||| | | | | |||||| ||
Sbjct 64 TCCCGCAAATCTCAACCATCCACCACCACAACCACCGCACCATCTTCCTCCTCCGCCGCC 123
Query 115 tcctctctccaccacctcATAGACCCAAAACAGAAAAACACATCTTCCAAATCCGACAGA 174
|||||||||||||||||||||||||||||||| |||||| | || |||||||||||| ||
Sbjct 124 TCCTCTCTCCACCACCTCATAGACCCAAAACACAAAAACCCTTCCTCCAAATCCGACCGA 183
Query 175 ATCGGTCTCTCTTGAAACACAATTCCTCCATGGAAGTCGAAGTCAAGCTCCGTCTCCTAA 234
||||||||||||| ||| || | |||||||||||||||||||||||||||||||||||
Sbjct 184 ATCGGTCTCTCTT-AAA-AC-A---CTCCATGGAAGTCGAAGTCAAGCTCCGTCTCCTAA 237
Query 235 CCGCCGCTGCTCATCTCCGTCTCACCACTCTCCTCACTCCTTTCCACCTCAAAACCCTTC 294
|||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||
Sbjct 238 CCGCCGCTGCTCATCTCCGTCTCACCACTCTCCTCACTCCATACCACCTCAAAACCCTTC 297
Query 295 ACCAACGCAACATCTTCTTCGACACACCCAAGAACGACCTCTCCCTCCGCCGCGCCGTCC 354
|||||||||||| |||||||||||||||||| ||||||||||| ||||||||||||||||
Sbjct 298 ACCAACGCAACACCTTCTTCGACACACCCAAAAACGACCTCTCTCTCCGCCGCGCCGTCC 357
Query 355 TCCGCCTCCGTTTCCTCCAAAACGCCGCCGTTTCTGCGTCTTCTTCTTCTCCGCCGCGTT 414
|||| ||||| ||||| ||||||||||||||||| ||| ||||| |||||||||||||||
Sbjct 358 TCCGTCTCCGCTTCCTTCAAAACGCCGCCGTTTCCGCGGCTTCTCCTTCTCCGCCGCGTT 417
Query 415 GTATCGTCTCTCTTAAAGCGAAACCAACGCTAGCTAATGGGATTAGTCGTGTGGAAGAAG 474
|||||||||||||||||||||| ||||| |||||||||||||||||||||||||| ||||
Sbjct 418 GTATCGTCTCTCTTAAAGCGAAGCCAACTCTAGCTAATGGGATTAGTCGTGTGGAGGAAG 477
Query 475 ATGAAGAGGAGATTGAGTATGGGATTGGTAAAGAATGTGTTG-GTTCACCGGCTAAGCTC 533
|||||||||||||||||||| ||||||||||||||||||||| || ||||||||||||||
Sbjct 478 ATGAAGAGGAGATTGAGTATTGGATTGGTAAAGAATGTGTTGAGT-CACCGGCTAAGCTC 536
Query 534 TCAGATATTGGATCTAGGGTTTTGAAAAGGGTTAAAGAGGAATATGGGTTTAAAGACTTT 593
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 537 TCAGATATTGGATCTAGGGTTTTGAAAAGGGTTAAAGAGGAATATGGGTTTAATGACTTT 596
Query 594 CTGGGGTTTGTTTGTTTAGGTGGGTTTGAGAATGTTAGGAATGTTTATGAGTGGAGAGGT 653
| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 597 TTAGGGTTTGTTTGTTTAGGTGGCTTTGAGAATGTTAGGAATGTTTATGAGTGGAGAGGT 656
Query 654 GTGCAACTTGAGGTTGATGAGACTAAGTATGATTTTGGGAACTGCTATGAGATTGAATGT 713
|| ||||||||||||||||||||||||||||||||||||| || |||||||||||||||
Sbjct 657 GTTAAACTTGAGGTTGATGAGACTAAGTATGATTTTGGGAATTGTTATGAGATTGAATGT 716
Query 714 GAGACAGAGGAACCTGAGCGTGTTAAGACAATGATTGAGGAGTTTCTTACTGAGAACAAG 773
|||||||||||||| ||||||||||||||||||||||||||||||||||| ||| | |||
Sbjct 717 GAGACAGAGGAACCAGAGCGTGTTAAGACAATGATTGAGGAGTTTCTTACAGAGGAGAAG 776
Query 774 ATTGAGTTTTCGAATTCCGACATGACAAAGTTTGCTGTTTTCCGGTCAGGAAAACTTCCT 833
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 777 ATTGAGTTTTCGAATTCCGACATGACAAAGTTTGCTGTTTTCCGGTCAGGAAAACTTCCT 836
Query 834 TGACA 838
|||||
Sbjct 837 TGACA 841
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41744576157
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5