BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg931037

Length=548
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G11910.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecu...   815    0.0  


> AT2G11910.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecular_function 
unknown; INVOLVED IN: biological_process unknown; 
LOCATED IN: chloroplast envelope; EXPRESSED IN: 22 plant 
structures; EXPRESSED DURING: 13 growth stages; Has 92883 
Blast hits to 31060 proteins in 1576 species: Archae - 765; 
Bacteria - 32670; Metazoa - 21164; Fungi - 12252; Plants - 4238; 
Viruses - 1282; Other Eukaryotes - 20512 (source: NCBI 
BLink). | chr2:4805684-4807310 REVERSE LENGTH=831
Length=831

 Score =  815 bits (441),  Expect = 0.0
 Identities = 517/553 (93%), Gaps = 8/553 (1%)
 Strand=Plus/Plus

Query  1    GTGTTCAATTTTGAGTAGATATGGAAGTGGTTGCTGTTGGGTCAATGGAGACGCAGAGAC  60
            ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct  127  GTGTTCAATTTTGAGTAGATATGGAAGTGGTTGCTGTTGGGTCAATGAAGACGCAGAGAC  186

Query  61   AGGAGACATGGGCTTGCTCTGTCACTGAGTCGTTTCTCATCCTCGTCGGAAAGAATCTGG  120
            ||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||
Sbjct  187  AGGAGACATGGGCTTGCTCTGTCACTGAGTCTTTTCTCCTCCTCGTCGGAAAGAATCTGG  246

Query  121  CTTGTCTTCTCCTTGTGGCAGAATCATTGCTGATAGGGTTGATTGCTGTTGACCAGAGGT  180
            |||||||||||||||||||||||||||| |||||||| ||| ||||||||||||||||||
Sbjct  247  CTTGTCTTCTCCTTGTGGCAGAATCATTACTGATAGGTTTGGTTGCTGTTGACCAGAGGT  306

Query  181  TGTCTCTGAAGGAGGGTTACAAAAGAGGAAGCCGTGCTGAGGAAAACAAAGATGCTAGtg  240
            ||||| | |||||||||||||||||||||||||||  |||||||||||||||||||||||
Sbjct  307  TGTCTGTCAAGGAGGGTTACAAAAGAGGAAGCCGTATTGAGGAAAACAAAGATGCTAGTG  366

Query  241  acactgacgatgacgacgatgatgatgaagacgctgatgaggatgacgacgatgaggatg  300
            ||| |||||||||||||   ||||||||||||||||||||||| ||||| ||||||||||
Sbjct  367  ACAGTGACGATGACGAC---GATGATGAAGACGCTGATGAGGACGACGATGATGAGGATG  423

Query  301  atgctaatgatgaagatTTCTCAGGGGGTGAAGGGGATGAAGG-G--GAAGAAGCTGATC  357
            ||||||||||||||||||||||||||||||||||||||||||| |  |||||||||||||
Sbjct  424  ATGCTAATGATGAAGATTTCTCAGGGGGTGAAGGGGATGAAGGAGAAGAAGAAGCTGATC  483

Query  358  CAGAGGATGATCCAGTGGCCAATGGTGGAGGAGGAAGcgatgacgatgatggcgatgatg  417
            ||||||||||||| ||| ||||||||||||||||||||||||| || |||| ||||||||
Sbjct  484  CAGAGGATGATCCTGTGACCAATGGTGGAGGAGGAAGCGATGATGAAGATGACGATGATG  543

Query  418  aggagggtgataatgatgacgatgatgaggacaatgaggatgaggaagaagacgaggatg  477
            |||||||||||||||||||||| |||||||||||||| ||||||||||||||||| ||||
Sbjct  544  AGGAGGGTGATAATGATGACGAGGATGAGGACAATGAAGATGAGGAAGAAGACGATGATG  603

Query  478  aggaagatgatgatgatgTTCGCCAGCCGCCCTCTAAGAAAAGAAAATAA--ATCATGAG  535
            ||||||||||||||||||||||||||||||| || ||||| ||||||| |  || |||||
Sbjct  604  AGGAAGATGATGATGATGTTCGCCAGCCGCCATCGAAGAAGAGAAAATGATGATGATGAG  663

Query  536  TTAATGAATGTTT  548
            || |||| |||||
Sbjct  664  TTCATGAGTGTTT  676



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 26272458881


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5