BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg931042

Length=1513
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G36970.1 | Symbols:  | Domain of unknown function (DUF1985) ...   239    7e-62
  AT3G32275.1 | Symbols:  | transposable element gene | chr3:1323...   115    1e-24
  AT1G40103.1 | Symbols:  | transposable element gene | chr1:1507...  99.0    1e-19


> AT1G36970.1 | Symbols:  | Domain of unknown function (DUF1985) 
| chr1:14016385-14018356 REVERSE LENGTH=1320
Length=1320

 Score =  239 bits (129),  Expect = 7e-62
 Identities = 238/288 (83%), Gaps = 18/288 (6%)
 Strand=Plus/Plus

Query  298  CTGTAAGACATGAATTTGCGGAGAGTGTTAAGAAGTTAAGAGCTCAGAATGTGAATCTTC  357
            |||||| |||||||||||||||||||||||||||||||||| |||||||| | |||||||
Sbjct  500  CTGTAAAACATGAATTTGCGGAGAGTGTTAAGAAGTTAAGATCTCAGAATCTAAATCTTC  559

Query  358  TGAAAAAGATTAAGGCCCTGAGATCTCTGAAGAT-GCCAAAATTTCAATATCACAA-ATT  415
            |||||||||| |||||| ||| |||| | || || ||| |||||||  || ||||| || 
Sbjct  560  TGAAAAAGATCAAGGCCTTGAAATCTGTCAA-ATTGCCCAAATTTCGTTACCACAAGAT-  617

Query  416  CTCTC-GCTCTAGACAGTCAACTTGTCCTCCATC-AAGAAAAGTACATAAAGCAGCTAAA  473
            ||| | | || |||||||||||| |||||||||  |||||| ||||    |||| || ||
Sbjct  618  CTC-CAGGTCCAGACAGTCAACTAGTCCTCCATTTAAGAAA-GTACGCCTAGCA-CTTAA  674

Query  474  C-ACC-C-CATTCTGTCTGAATCTCCTGTGAAGGCTGCTGTAGATTCTCAAAACATC-CG  529
            | ||| | ||| | ||||||||||||||| ||  ||| |||| |||||| ||||||| | 
Sbjct  675  CCACCACACAT-C-GTCTGAATCTCCTGTCAACCCTGTTGTATATTCTCCAAACATCAC-  731

Query  530  AACTCCCCCTTCA-AGTCCATTAACTTCAATGCATGAGGAAGACAATG  576
            ||||||||||||| |  |||||||||||| |||| |||| ||||||||
Sbjct  732  AACTCCCCCTTCAGAA-CCATTAACTTCATTGCACGAGGGAGACAATG  778


> AT3G32275.1 | Symbols:  | transposable element gene | chr3:13231439-13233121 
FORWARD LENGTH=1683
Length=1683

 Score =  115 bits (62),  Expect = 1e-24
 Identities = 72/77 (94%), Gaps = 0/77 (0%)
 Strand=Plus/Plus

Query  301   TAAGACATGAATTTGCGGAGAGTGTTAAGAAGTTAAGAGCTCAGAATGTGAATCTTCTGA  360
             |||||||||||||||||||||||||||||||||||||| |||||||| | ||||||||||
Sbjct  1519  TAAGACATGAATTTGCGGAGAGTGTTAAGAAGTTAAGATCTCAGAATTTAAATCTTCTGA  1578

Query  361   AAAAGATTAAGGCCCTG  377
             ||||||| |||| ||||
Sbjct  1579  AAAAGATCAAGGTCCTG  1595


> AT1G40103.1 | Symbols:  | transposable element gene | chr1:15078534-15081356 
REVERSE LENGTH=2823
Length=2823

 Score = 99.0 bits (53),  Expect = 1e-19
 Identities = 70/78 (90%), Gaps = 2/78 (3%)
 Strand=Plus/Plus

Query  301   TAAGACATGAATTTGCGGAGAGTGTTAAGAAGTTAAGAGCTCAGAATGTGAATCTTCTGA  360
             |||||||||||||||||||||||||||||||||||||| |||||||| | ||||| ||||
Sbjct  1585  TAAGACATGAATTTGCGGAGAGTGTTAAGAAGTTAAGATCTCAGAATCTAAATCTCCTGA  1644

Query  361   AAAAGATTAAGGC-CCTG  377
             |||| || | ||| ||||
Sbjct  1645  AAAATATCA-GGCTCCTG  1661



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 74648210415


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5