BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg931043 Length=1663 Score E Sequences producing significant alignments: (Bits) Value AT2G12400.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 2543 0.0 > AT2G12400.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G25270.1); Has 177 Blast hits to 172 proteins in 23 species: Archae - 0; Bacteria - 2; Metazoa - 3; Fungi - 0; Plants - 164; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink). | chr2:5004943-5008322 REVERSE LENGTH=2009 Length=2009 Score = 2543 bits (1377), Expect = 0.0 Identities = 1573/1669 (94%), Gaps = 8/1669 (0%) Strand=Plus/Plus Query 1 aaaaaaaaa-aaCCAGACATTATGTTGTGTTCCAGATCTCAAAGAGTGTTTATACTTGTG 59 ||||||||| |||||||||| |||||||||| |||||||||||||||||||||||||||| Sbjct 162 AAAAAAAAAGAACCAGACATAATGTTGTGTTTCAGATCTCAAAGAGTGTTTATACTTGTG 221 Query 60 TCTTTGTGTTTACTCTCTTCGTTTCTTCTGGTCGTCACTGGAACAACATCGAATACTGGG 119 ||| ||||||||||||||||||||||| |||||||||||||||||||||||| ||||||| Sbjct 222 TCTCTGTGTTTACTCTCTTCGTTTCTTGTGGTCGTCACTGGAACAACATCGATTACTGGG 281 Query 120 GTTGGTAACGAAGAAGAAGGAGGTGT---AGAAGAATGGAGAACAAGTGTAATAGAAAGA 176 |||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||| Sbjct 282 GTTGGTAACGAAGAAGAAAGAGGTGTAGAAGAAGAATGGAGAACAAGTGTAATAGAAAGA 341 Query 177 GTAATTGCAGAGGAAAGTGGAGAAAACTCATCTCTGATTTTGGCTGCAAAGAGAACCAA- 235 ||||||||||||||||||||||| ||||||||||||||||| ||||||||||||| ||| Sbjct 342 GTAATTGCAGAGGAAAGTGGAGAGAACTCATCTCTGATTTTAGCTGCAAAGAGAA-CAAG 400 Query 236 AAGAAAAGATCCTAATGATAATTTCAAATTCTACACTGGTGGATGGAATATAAGCAATTC 295 ||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 401 AAGAAAAGATCCTGCTGATAATTTCAAACTCTACACTGGTGGATGGAATATAAGCAATTC 460 Query 296 CCATTATTTGACTTCTGTTGGTTATACAGCGGTGCCTTTCATTATAATAGCAGTAGTCTG 355 |||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||| Sbjct 461 CCATTATTTGACTTCTGTTGGTTATACAGCGGCGCCTTTCATTATAATAGCACTAGTCTG 520 Query 356 GTTTGTGTTCTTTGGGCTATCCTTGTCTCTGATTTGCCTTTGTTATTGCTGCTGTGCCCG 415 ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 521 GTTTGTGTTCTTTGGGCTATCATTGTCTCTGATTTGCCTTTGTTATTGCTGCTGTGCCCG 580 Query 416 TCAACCTTACGGCTATTCCCGCGTTGCTTATGCTCTATCCCTTATCCTCCTCATATCATT 475 |||| |||| || |||||||| |||||||||||||||||||||||||||||||| || || Sbjct 581 TCAATCTTATGGTTATTCCCGGGTTGCTTATGCTCTATCCCTTATCCTCCTCATCTCGTT 640 Query 476 CACAATTGCAGCAATTATAGGATGTATTTTCCTTTACACGGGTCAAGGAAAATTTCATGC 535 |||||| |||||||||||||||||| |||| |||||||| |||||||| ||||||||||| Sbjct 641 CACAATCGCAGCAATTATAGGATGTGTTTTTCTTTACACTGGTCAAGGGAAATTTCATGC 700 Query 536 TAGCACAACCGATACTTTGGACTATGTGGTGAGTCAAGCAAATCTCACGTCAGAAAACCT 595 ||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||| Sbjct 701 TAGCACAACCGATACTTTGGACTATGTCGTGAGTCAAGCGAATCTCACGTCAGAAAACCT 760 Query 596 CAGGAATGTGTCAGATTATCTCAATGCAGCTAAGAAAGTGGATGTGCAATCCAGCATTCT 655 ||||||||||||||||||||| |||||||||||||| || |||||||||||||||||| | Sbjct 761 CAGGAATGTGTCAGATTATCTTAATGCAGCTAAGAAGGTTGATGTGCAATCCAGCATTTT 820 Query 656 GCCACAGGATGTTCTCTCGAGCATCGACAACATACAGGGAAAGATTAACTCGTCCGCCAC 715 |||||| |||||||||||||| ||||||||||||||||||||||| |||||||||||||| Sbjct 821 GCCACAAGATGTTCTCTCGAGTATCGACAACATACAGGGAAAGATAAACTCGTCCGCCAC 880 Query 716 AACTCTTTCTGTGAAAACAATGGAGAACCAAGACAAGATTCAAAATGTCTTGGACAGCAT 775 ||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||| Sbjct 881 AACTCTTTCTGTGAAAACAATGGAGAACCAAGACAAGATACAAAATGTCTTGGACATCAT 940 Query 776 GAGACTTGCGCTCGTCATCATCGCTGCTGTGATGCTTTTCCTTGCATTTATTGGATTTCT 835 ||||||||| ||||||||||||||||||||||||||||||||||| ||||| |||||||| Sbjct 941 GAGACTTGCTCTCGTCATCATCGCTGCTGTGATGCTTTTCCTTGCGTTTATCGGATTTCT 1000 Query 836 TCTCTCTATCTTTGGACTGCAGTGCCTTGTGTATACGTTGGTGATCCTTGGTTGGATTCT 895 ||||||||| ||||||||||| |||||||| ||||||||||||||||||||||||||||| Sbjct 1001 TCTCTCTATTTTTGGACTGCAATGCCTTGTATATACGTTGGTGATCCTTGGTTGGATTCT 1060 Query 896 CGTCACGGTTACCTTCGTCTTGTGTGGTGGATTTCTGCTTCTACACAACGTTGTAGGGGA 955 ||||||||||||||||||||| |||||||||||| | ||||||||||||||||||||||| Sbjct 1061 CGTCACGGTTACCTTCGTCTTATGTGGTGGATTTTTACTTCTACACAACGTTGTAGGGGA 1120 Query 956 TACGTGTGTTGCGATGGACCAGTGGGTCCAAAACCCAACAGCCCACACGGCTCTAGATGA 1015 ||||||||||||||||||||| |||||||||||||||||||| |||||||||||||| || Sbjct 1121 TACGTGTGTTGCGATGGACCAATGGGTCCAAAACCCAACAGCTCACACGGCTCTAGACGA 1180 Query 1016 TATTTTACCATGTGTAGATAATGCAACCGCGAGAGAAACATTGGA-TCGGACTAAGCTTG 1074 |||| |||| ||||| ||||||||||||||||||||||||||| | |||||||||||||| Sbjct 1181 TATTCTACCGTGTGTTGATAATGCAACCGCGAGAGAAACATTG-ACTCGGACTAAGCTTG 1239 Query 1075 TGACATACAAGTTGGTCAATCTTCTTGACAATGCCATTAGCAACATGACCAACAGGAACT 1134 | |||||| ||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 1240 TAACATACCAGTTGGTCAATCTTCTTGACAATGCCATTAGCAACATGACCAACAGGAATT 1299 Query 1135 TCCCGCCTCAACTCCGCCCTCTTTATTACAACCAGTCAGGTCCACTAATGCCTTTGCTCT 1194 ||||||||||| |||| |||||||||||||||||||||||||||||||||||| | |||| Sbjct 1300 TCCCGCCTCAATTCCGGCCTCTTTATTACAACCAGTCAGGTCCACTAATGCCTCTACTCT 1359 Query 1195 GTAACCCCTTCAATGCTGATCTCTCTGATCACCAGTGCCAGCCTGGTCAGGTCCATCTGA 1254 ||||||||||||| |||||||||||||| | ||| ||||||||||||||||||||||||| Sbjct 1360 GTAACCCCTTCAACGCTGATCTCTCTGACCGCCAATGCCAGCCTGGTCAGGTCCATCTGA 1419 Query 1255 ACAATGCAACAGAGGTGTGGAAGAACTTCACTTGCCAAATCGTAACACCGGGAACATGCA 1314 |||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||| | Sbjct 1420 ACAATGCAACCGAGGTGTGGAAGAACTTCACTTGCCAAATTGTAACACCGGGAACATGTA 1479 Query 1315 GCACACAGGGACGGTTGACACCAAAGCTTTACAGTCAGATGGCTGCAGCAGTTAATGTAA 1374 | |||| ||||||||||||||||||||||||||| |||||||||||||| |||||||||| Sbjct 1480 GTACACCGGGACGGTTGACACCAAAGCTTTACAGCCAGATGGCTGCAGCGGTTAATGTAA 1539 Query 1375 GCTATGGACTGTACAAGTACGGTCCATTCTTGGCAGACCTGCAAGGGTGTGACTTTGTGA 1434 ||||||| ||||||||||||| || |||||||||||||| |||||||||||||| |||| Sbjct 1540 GCTATGGTTTGTACAAGTACGGACCGTTCTTGGCAGACCTACAAGGGTGTGACTTCGTGA 1599 Query 1435 GGTCTACATTCACTGCTATAGAGAGGGATCATTGTCCGGGACTGAAGAGATACACACAGT 1494 ||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||| | Sbjct 1600 GGTCTACATTCACTGATATAGAGAGGGATCATTGTCCGGGACTTAAGAGATACACACAAT 1659 Query 1495 GGATCTATGTGGGTCTTGTGGTAGTGTCTGCTTCTGTAATGTCATCTTTGGTGTTTTGGG 1554 |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 1660 GGATCTATGTGGGTCTTGTGGTGGTGTCTGCTTCTGTAATGTCATCTTTGGTGTTTTGGG 1719 Query 1555 TTATATATTCGCGGGAGAGGAGGCACCGAGTTTACACAAAAGACTACAATGCTATGCACT 1614 |||||||| || | |||||||||||||| |||||||||||||||||||| |||||||||| Sbjct 1720 TTATATATGCGAGAGAGAGGAGGCACCGGGTTTACACAAAAGACTACAACGCTATGCACT 1779 Query 1615 CTGAAGATCCACGAAGCAAGGGCCAGTGAGATATTATATTCCTTTGGAG 1663 ||||||||||||||||||||||||| ||||| ||||| ||| ||||||| Sbjct 1780 CTGAAGATCCACGAAGCAAGGGCCACTGAGAGATTATGTTCTTTTGGAG 1828 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 82178292165 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5