BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg931043
Length=1663
Score E
Sequences producing significant alignments: (Bits) Value
AT2G12400.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 2543 0.0
> AT2G12400.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: endomembrane system; EXPRESSED IN: 25 plant
structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis
thaliana protein match is: unknown protein (TAIR:AT2G25270.1);
Has 177 Blast hits to 172 proteins in 23 species: Archae
- 0; Bacteria - 2; Metazoa - 3; Fungi - 0; Plants - 164;
Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink). |
chr2:5004943-5008322 REVERSE LENGTH=2009
Length=2009
Score = 2543 bits (1377), Expect = 0.0
Identities = 1573/1669 (94%), Gaps = 8/1669 (0%)
Strand=Plus/Plus
Query 1 aaaaaaaaa-aaCCAGACATTATGTTGTGTTCCAGATCTCAAAGAGTGTTTATACTTGTG 59
||||||||| |||||||||| |||||||||| ||||||||||||||||||||||||||||
Sbjct 162 AAAAAAAAAGAACCAGACATAATGTTGTGTTTCAGATCTCAAAGAGTGTTTATACTTGTG 221
Query 60 TCTTTGTGTTTACTCTCTTCGTTTCTTCTGGTCGTCACTGGAACAACATCGAATACTGGG 119
||| ||||||||||||||||||||||| |||||||||||||||||||||||| |||||||
Sbjct 222 TCTCTGTGTTTACTCTCTTCGTTTCTTGTGGTCGTCACTGGAACAACATCGATTACTGGG 281
Query 120 GTTGGTAACGAAGAAGAAGGAGGTGT---AGAAGAATGGAGAACAAGTGTAATAGAAAGA 176
|||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||
Sbjct 282 GTTGGTAACGAAGAAGAAAGAGGTGTAGAAGAAGAATGGAGAACAAGTGTAATAGAAAGA 341
Query 177 GTAATTGCAGAGGAAAGTGGAGAAAACTCATCTCTGATTTTGGCTGCAAAGAGAACCAA- 235
||||||||||||||||||||||| ||||||||||||||||| ||||||||||||| |||
Sbjct 342 GTAATTGCAGAGGAAAGTGGAGAGAACTCATCTCTGATTTTAGCTGCAAAGAGAA-CAAG 400
Query 236 AAGAAAAGATCCTAATGATAATTTCAAATTCTACACTGGTGGATGGAATATAAGCAATTC 295
||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 401 AAGAAAAGATCCTGCTGATAATTTCAAACTCTACACTGGTGGATGGAATATAAGCAATTC 460
Query 296 CCATTATTTGACTTCTGTTGGTTATACAGCGGTGCCTTTCATTATAATAGCAGTAGTCTG 355
|||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||
Sbjct 461 CCATTATTTGACTTCTGTTGGTTATACAGCGGCGCCTTTCATTATAATAGCACTAGTCTG 520
Query 356 GTTTGTGTTCTTTGGGCTATCCTTGTCTCTGATTTGCCTTTGTTATTGCTGCTGTGCCCG 415
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 521 GTTTGTGTTCTTTGGGCTATCATTGTCTCTGATTTGCCTTTGTTATTGCTGCTGTGCCCG 580
Query 416 TCAACCTTACGGCTATTCCCGCGTTGCTTATGCTCTATCCCTTATCCTCCTCATATCATT 475
|||| |||| || |||||||| |||||||||||||||||||||||||||||||| || ||
Sbjct 581 TCAATCTTATGGTTATTCCCGGGTTGCTTATGCTCTATCCCTTATCCTCCTCATCTCGTT 640
Query 476 CACAATTGCAGCAATTATAGGATGTATTTTCCTTTACACGGGTCAAGGAAAATTTCATGC 535
|||||| |||||||||||||||||| |||| |||||||| |||||||| |||||||||||
Sbjct 641 CACAATCGCAGCAATTATAGGATGTGTTTTTCTTTACACTGGTCAAGGGAAATTTCATGC 700
Query 536 TAGCACAACCGATACTTTGGACTATGTGGTGAGTCAAGCAAATCTCACGTCAGAAAACCT 595
||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct 701 TAGCACAACCGATACTTTGGACTATGTCGTGAGTCAAGCGAATCTCACGTCAGAAAACCT 760
Query 596 CAGGAATGTGTCAGATTATCTCAATGCAGCTAAGAAAGTGGATGTGCAATCCAGCATTCT 655
||||||||||||||||||||| |||||||||||||| || |||||||||||||||||| |
Sbjct 761 CAGGAATGTGTCAGATTATCTTAATGCAGCTAAGAAGGTTGATGTGCAATCCAGCATTTT 820
Query 656 GCCACAGGATGTTCTCTCGAGCATCGACAACATACAGGGAAAGATTAACTCGTCCGCCAC 715
|||||| |||||||||||||| ||||||||||||||||||||||| ||||||||||||||
Sbjct 821 GCCACAAGATGTTCTCTCGAGTATCGACAACATACAGGGAAAGATAAACTCGTCCGCCAC 880
Query 716 AACTCTTTCTGTGAAAACAATGGAGAACCAAGACAAGATTCAAAATGTCTTGGACAGCAT 775
||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||
Sbjct 881 AACTCTTTCTGTGAAAACAATGGAGAACCAAGACAAGATACAAAATGTCTTGGACATCAT 940
Query 776 GAGACTTGCGCTCGTCATCATCGCTGCTGTGATGCTTTTCCTTGCATTTATTGGATTTCT 835
||||||||| ||||||||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct 941 GAGACTTGCTCTCGTCATCATCGCTGCTGTGATGCTTTTCCTTGCGTTTATCGGATTTCT 1000
Query 836 TCTCTCTATCTTTGGACTGCAGTGCCTTGTGTATACGTTGGTGATCCTTGGTTGGATTCT 895
||||||||| ||||||||||| |||||||| |||||||||||||||||||||||||||||
Sbjct 1001 TCTCTCTATTTTTGGACTGCAATGCCTTGTATATACGTTGGTGATCCTTGGTTGGATTCT 1060
Query 896 CGTCACGGTTACCTTCGTCTTGTGTGGTGGATTTCTGCTTCTACACAACGTTGTAGGGGA 955
||||||||||||||||||||| |||||||||||| | |||||||||||||||||||||||
Sbjct 1061 CGTCACGGTTACCTTCGTCTTATGTGGTGGATTTTTACTTCTACACAACGTTGTAGGGGA 1120
Query 956 TACGTGTGTTGCGATGGACCAGTGGGTCCAAAACCCAACAGCCCACACGGCTCTAGATGA 1015
||||||||||||||||||||| |||||||||||||||||||| |||||||||||||| ||
Sbjct 1121 TACGTGTGTTGCGATGGACCAATGGGTCCAAAACCCAACAGCTCACACGGCTCTAGACGA 1180
Query 1016 TATTTTACCATGTGTAGATAATGCAACCGCGAGAGAAACATTGGA-TCGGACTAAGCTTG 1074
|||| |||| ||||| ||||||||||||||||||||||||||| | ||||||||||||||
Sbjct 1181 TATTCTACCGTGTGTTGATAATGCAACCGCGAGAGAAACATTG-ACTCGGACTAAGCTTG 1239
Query 1075 TGACATACAAGTTGGTCAATCTTCTTGACAATGCCATTAGCAACATGACCAACAGGAACT 1134
| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1240 TAACATACCAGTTGGTCAATCTTCTTGACAATGCCATTAGCAACATGACCAACAGGAATT 1299
Query 1135 TCCCGCCTCAACTCCGCCCTCTTTATTACAACCAGTCAGGTCCACTAATGCCTTTGCTCT 1194
||||||||||| |||| |||||||||||||||||||||||||||||||||||| | ||||
Sbjct 1300 TCCCGCCTCAATTCCGGCCTCTTTATTACAACCAGTCAGGTCCACTAATGCCTCTACTCT 1359
Query 1195 GTAACCCCTTCAATGCTGATCTCTCTGATCACCAGTGCCAGCCTGGTCAGGTCCATCTGA 1254
||||||||||||| |||||||||||||| | ||| |||||||||||||||||||||||||
Sbjct 1360 GTAACCCCTTCAACGCTGATCTCTCTGACCGCCAATGCCAGCCTGGTCAGGTCCATCTGA 1419
Query 1255 ACAATGCAACAGAGGTGTGGAAGAACTTCACTTGCCAAATCGTAACACCGGGAACATGCA 1314
|||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||| |
Sbjct 1420 ACAATGCAACCGAGGTGTGGAAGAACTTCACTTGCCAAATTGTAACACCGGGAACATGTA 1479
Query 1315 GCACACAGGGACGGTTGACACCAAAGCTTTACAGTCAGATGGCTGCAGCAGTTAATGTAA 1374
| |||| ||||||||||||||||||||||||||| |||||||||||||| ||||||||||
Sbjct 1480 GTACACCGGGACGGTTGACACCAAAGCTTTACAGCCAGATGGCTGCAGCGGTTAATGTAA 1539
Query 1375 GCTATGGACTGTACAAGTACGGTCCATTCTTGGCAGACCTGCAAGGGTGTGACTTTGTGA 1434
||||||| ||||||||||||| || |||||||||||||| |||||||||||||| ||||
Sbjct 1540 GCTATGGTTTGTACAAGTACGGACCGTTCTTGGCAGACCTACAAGGGTGTGACTTCGTGA 1599
Query 1435 GGTCTACATTCACTGCTATAGAGAGGGATCATTGTCCGGGACTGAAGAGATACACACAGT 1494
||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||| |
Sbjct 1600 GGTCTACATTCACTGATATAGAGAGGGATCATTGTCCGGGACTTAAGAGATACACACAAT 1659
Query 1495 GGATCTATGTGGGTCTTGTGGTAGTGTCTGCTTCTGTAATGTCATCTTTGGTGTTTTGGG 1554
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1660 GGATCTATGTGGGTCTTGTGGTGGTGTCTGCTTCTGTAATGTCATCTTTGGTGTTTTGGG 1719
Query 1555 TTATATATTCGCGGGAGAGGAGGCACCGAGTTTACACAAAAGACTACAATGCTATGCACT 1614
|||||||| || | |||||||||||||| |||||||||||||||||||| ||||||||||
Sbjct 1720 TTATATATGCGAGAGAGAGGAGGCACCGGGTTTACACAAAAGACTACAACGCTATGCACT 1779
Query 1615 CTGAAGATCCACGAAGCAAGGGCCAGTGAGATATTATATTCCTTTGGAG 1663
||||||||||||||||||||||||| ||||| ||||| ||| |||||||
Sbjct 1780 CTGAAGATCCACGAAGCAAGGGCCACTGAGAGATTATGTTCTTTTGGAG 1828
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 82178292165
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5