BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg931044
Length=790
Score E
Sequences producing significant alignments: (Bits) Value
AT2G12462.1 | Symbols: | BEST Arabidopsis thaliana protein mat... 1158 0.0
> AT2G12462.1 | Symbols: | BEST Arabidopsis thaliana protein match
is: Sterile alpha motif (SAM) domain-containing protein
(TAIR:AT1G15760.1); Has 35333 Blast hits to 34131 proteins
in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974;
Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes
- 9610 (source: NCBI BLink). | chr2:5050434-5051613 REVERSE
LENGTH=927
Length=927
Score = 1158 bits (627), Expect = 0.0
Identities = 731/782 (93%), Gaps = 4/782 (1%)
Strand=Plus/Plus
Query 11 CACACAGACGATGGATTGGTTCTCATGGCTGTCTAAAACCGACCTTGATCCGACCCTAAG 70
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 19 CACACACACGATGGATTGGTTCTCATGGCTGTCTAAAACCGACCTTGATCCGACCCTAAG 78
Query 71 CTACGAGTACGGACTCATCTTCGCTCAAAAGAAGCTCCAGAGTGAAGACATAGCTCTTTT 130
|||||||||||||||||| ||||| ||||||||||||||| |||||||||| || |||||
Sbjct 79 CTACGAGTACGGACTCATATTCGCCCAAAAGAAGCTCCAGGGTGAAGACATCGCCCTTTT 138
Query 131 CAACCACAACTTTCTCCGGCGACTTGGTATTACTGT-AGCCAAACACCGCGTAGAAATTC 189
|||||||||||||||||||||||||||| ||||||| | |||||||||||||||| ||||
Sbjct 139 CAACCACAACTTTCTCCGGCGACTTGGTGTTACTGTGA-CCAAACACCGCGTAGAGATTC 197
Query 190 TCAAACTTTCAAAGAGAGAAACACAAGCACTTAGCTCCTATCAGCATCGTCCCT-TCTCG 248
||||||| ||||||||||||||||||||||| ||||||||| | |||||||| | |||||
Sbjct 198 TCAAACTCTCAAAGAGAGAAACACAAGCACTCAGCTCCTATAACCATCGTCC-TGTCTCG 256
Query 249 GCCAAACTCATATCCGTCGTCATCAAGGCCACCAAAAGTGTCTGCAATCGCTTAAACAAG 308
|||||||||||||| |||||||||||||| |||||||||||| |||||||||||||||||
Sbjct 257 GCCAAACTCATATCTGTCGTCATCAAGGCAACCAAAAGTGTCGGCAATCGCTTAAACAAG 316
Query 309 TGGCTTTATCTCGGAGGAACTGCCGTGGTTGAACCTCTTAAGGAGAAACAGTCGCCGACG 368
||||||| |||||||||||| ||||| |||||||| || |||||||| ||||||||| ||
Sbjct 317 TGGCTTTCTCTCGGAGGAACCGCCGTAGTTGAACCGCTCAAGGAGAAGCAGTCGCCGCCG 376
Query 369 CGAGCCTGCCGTACCGCAGCGGTTTTGACTGGTAATAATAATAAAGTCAATGCTGAAAAA 428
| |||| |||||||| ||| |||||||||||||||| |||||||||||||||||||||
Sbjct 377 CCTGCCTACCGTACCGGAGCCTTTTTGACTGGTAATAACAATAAAGTCAATGCTGAAAAA 436
Query 429 GCTGAGGTACAAGTGGAGAGATTACCTGTGATCAAGAGGAAAATGATAGCGAAATCTGGA 488
|||| ||||||||||||||||||||||||||| |||||||||| ||| | ||||||||||
Sbjct 437 GCTGTGGTACAAGTGGAGAGATTACCTGTGATAAAGAGGAAAAGGATTGTGAAATCTGGA 496
Query 489 CCGTTGGATCTAAAACATGGAATGCAAGAGAAAATGACGTTAGTAAGCAACCGAAGCATG 548
|||||||||| ||| |||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 497 CCGTTGGATCGAAACCATGGAATACAAGAGAAAATGACGTTAGTAAGCAACCGAAGCATG 556
Query 549 AACCTATCTGGACCGTTGGATCGAAGTGTCCAAGAAAGACTCATATTAGCTTATAGAAGC 608
||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||
Sbjct 557 AACCTATCTGGACCGTTGGATAGAAGTGTCCAAGAAAGACTCATTTTAGCTTATAGAAGC 616
Query 609 CCTGTTGTGTCGGGACAGTTAGATGGAAACTTAAACGAATGGTTGAGATTATCAGGGCCG 668
||| ||||||||||||||||||||||||||||||||||| | ||||||||||||||||||
Sbjct 617 CCTATTGTGTCGGGACAGTTAGATGGAAACTTAAACGAACGATTGAGATTATCAGGGCCG 676
Query 669 TTGAAAGGAAGACCACCGAGCCCAAGTGTGTATGTGGAGTACAATAAAAGAGACGATGAC 728
||||||||||||||||| |||||||||||||||||||||||||||||||| || ||||||
Sbjct 677 TTGAAAGGAAGACCACCAAGCCCAAGTGTGTATGTGGAGTACAATAAAAGGGATGATGAC 736
Query 729 ACAAGATGGGATGCTATGTTTCATAACTTGAAGCCTACGTAGATCTTGAGTAGAAATTGT 788
||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 737 ACACGATGGGATGCTATGTTTCATAACTTGAAGCCTACGTAGATCTTGAGTATAAATTGT 796
Query 789 TT 790
||
Sbjct 797 TT 798
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38429122455
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5