BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg931047
Length=534
Score E
Sequences producing significant alignments: (Bits) Value
AT5G51370.2 | Symbols: | RNI-like superfamily protein | chr5:2... 294 5e-79
AT5G51380.1 | Symbols: | RNI-like superfamily protein | chr5:2... 259 2e-68
> AT5G51370.2 | Symbols: | RNI-like superfamily protein | chr5:20872763-20874249
FORWARD LENGTH=1418
Length=1418
Score = 294 bits (159), Expect = 5e-79
Identities = 219/246 (89%), Gaps = 11/246 (4%)
Strand=Plus/Plus
Query 68 TAGCTTTGATGGGATTAAAGCAATTGGG--A-------AA-TG-TTGAGGATTTGACTAT 116
|||||||||||||||||||||||||||| | || || ||||||| |||| |||
Sbjct 740 TAGCTTTGATGGGATTAAAGCAATTGGGCAATGTTGTGAAGTGCTTGAGGAGTTGAGTAT 799
Query 117 TTATGATCATAGAATGGATGATGGTTGGATAGCTGCACTTTCGTATATTGAGAGTTTGAA 176
|| ||| ||||||||||| ||||||||||| ||||| ||||||||| |||||||||||||
Sbjct 800 TTGTGACCATAGAATGGACGATGGTTGGATCGCTGCGCTTTCGTATTTTGAGAGTTTGAA 859
Query 177 GATATTGAAGATTTCTTCGCGTAGAAGGATAGACGCTAGTCCTGGACCGGAAAAGTTGTT 236
|||||||| |||||| || |||||| |||||||||||||||||||||||||||||||||
Sbjct 860 GATATTGAGGATTTCGTCTTGTAGAAAGATAGACGCTAGTCCTGGACCGGAAAAGTTGTT 919
Query 237 GCGGTCTTGTCCAGCTATGGAGAGTTTGCAACTCAAGAGGTGTTGTTTGAATGATAAGGA 296
|||||||||||| ||||||||||||||||| ||||||||||||||||||||||| |||||
Sbjct 920 GCGGTCTTGTCCTGCTATGGAGAGTTTGCAGCTCAAGAGGTGTTGTTTGAATGACAAGGA 979
Query 297 GGGGAT 302
||||||
Sbjct 980 GGGGAT 985
Score = 268 bits (145), Expect = 3e-71
Identities = 172/185 (93%), Gaps = 2/185 (1%)
Strand=Plus/Plus
Query 310 TGTTGGGGACTGAATGGTGATTCTTTCAGCTTGGCTAAAGCTTTCAGGAGGGTGAGGTTT 369
||||||||||||| || ||||| |||||| ||||||||||||||||||||||||||||||
Sbjct 1038 TGTTGGGGACTGAGTGATGATTGTTTCAGTTTGGCTAAAGCTTTCAGGAGGGTGAGGTTT 1097
Query 370 CTGTCTTTG-AAGGGATGCTCAGTCTTAACATCAGGCGGTTTAGAGTCGGTGATTTTACA 428
||||||||| |||| ||||||||| ||||||||||| |||||||||||||||||||||||
Sbjct 1098 CTGTCTTTGGAAGG-ATGCTCAGTTTTAACATCAGGAGGTTTAGAGTCGGTGATTTTACA 1156
Query 429 CTGGGGAGAGCTTGAGAGCATGAGAGTAGTGTCATGTAAAAGCATAAAAGACAGCGAAAT 488
|||| |||||||||||| |||||||||||||||||||| ||||||||||||||||||||
Sbjct 1157 TTGGGAAGAGCTTGAGAGTATGAGAGTAGTGTCATGTAAGAGCATAAAAGACAGCGAAAT 1216
Query 489 ATCAC 493
||||
Sbjct 1217 TTCAC 1221
> AT5G51380.1 | Symbols: | RNI-like superfamily protein | chr5:20875876-20877989
FORWARD LENGTH=1719
Length=1719
Score = 259 bits (140), Expect = 2e-68
Identities = 218/253 (86%), Gaps = 15/253 (6%)
Strand=Plus/Plus
Query 68 TAGCTTTGATGGGATTAAAGCAATTGGG--A-------AA-TG-TTGAGGATTTGACTAT 116
||| |||||||||||||||||||||||| | || || ||||||| ||| |||
Sbjct 897 TAGTTTTGATGGGATTAAAGCAATTGGGCAATGTTGTGAAGTGCTTGAGGAGCTGAGTAT 956
Query 117 TTATGATCATAGAATGGATGATGGTTGGATAGCTGCACTTTCGTATATTGAGAGTTTGAA 176
|| ||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||
Sbjct 957 TTGTGATCATAGAATGGATGATGGTTGGATAGCTGCGCTTTCGTATTTTGAGAGTTTGAA 1016
Query 177 GA-TATTGAAGATTTCTTCGCGTAGAAGGATAGACGCTAGTCCTGGACCGGAAAAGTTGT 235
|| | ||| |||||| || |||||| |||||| ||||||||||||||| |||||||
Sbjct 1017 GACT-TTGTTGATTTCGTCTTGTAGAAAGATAGATTCTAGTCCTGGACCGGGAAAGTTGC 1075
Query 236 TGCGG-TCTTGTCCAGCTATGGAGAGTTTGCAACTCAAGAGGTGTTGTTTGAATGATAAG 294
|| || |||||||||||| |||||||||||||||||| |||||||||||||||||| |||
Sbjct 1076 TG-GGATCTTGTCCAGCTCTGGAGAGTTTGCAACTCAGGAGGTGTTGTTTGAATGACAAG 1134
Query 295 GAGGGGATGAGAG 307
|||||||||||||
Sbjct 1135 GAGGGGATGAGAG 1147
Score = 228 bits (123), Expect = 5e-59
Identities = 165/185 (89%), Gaps = 4/185 (2%)
Strand=Plus/Plus
Query 310 TGTTGGGGACTGAATGGTGATTCTTTCAGCTTGGCTAAAGCTTTCAGGAGGGTGAGGTTT 369
||||||||| || ||| ||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1195 TGTTGGGGATTGGATGATGATTCTTTCAGCTTGGCTAAAGCTTTCAGGAGGGTGCGGTTT 1254
Query 370 CTGTCTTTG-AAGGGATGCTCAGTCTTAACATCAGGCGGTTTAGAGTCGGTGATTTTACA 428
| |||||| |||| ||||||| || ||||| || ||||||||||||| || ||| ||||
Sbjct 1255 TTATCTTTGGAAGG-ATGCTCAATCCTAACAACAAGCGGTTTAGAGTCAGTAATTCTACA 1313
Query 429 CTGGGGAGAGCTTGAGAGCATGAGAGTAGTGTCATGTAA-AAGCATAAAAGACAGCGAAA 487
||||| |||||||||||||||||||||||| |||||||| || |||||||||||||||||
Sbjct 1314 CTGGGAAGAGCTTGAGAGCATGAGAGTAGTATCATGTAAGAA-CATAAAAGACAGCGAAA 1372
Query 488 TATCA 492
| |||
Sbjct 1373 TTTCA 1377
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 25569180823
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5