BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg931053
Length=1757
Score E
Sequences producing significant alignments: (Bits) Value
AT2G12550.1 | Symbols: | ubiquitin-associated (UBA)/TS-N domai... 2226 0.0
> AT2G12550.1 | Symbols: | ubiquitin-associated (UBA)/TS-N domain-containing
protein | chr2:5114868-5118747 FORWARD LENGTH=1963
Length=1963
Score = 2226 bits (1205), Expect = 0.0
Identities = 1382/1466 (94%), Gaps = 18/1466 (1%)
Strand=Plus/Plus
Query 20 CATCAATGGCGAAACTCAAGGTTGCTGGTACATGGGGAGGTATAATTGAAGTAGAACTCG 79
|||||||||||||||| ||||||||||||||||||||||| ||| |||| ||||||||||
Sbjct 9 CATCAATGGCGAAACTAAAGGTTGCTGGTACATGGGGAGGCATACTTGAGGTAGAACTCG 68
Query 80 AGAATTGGACTCTACACATGTTGAGAGACGAAGTCGCTAAGCGATCAGGACTTGATCCTG 139
|||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 69 AGAATTGGACTCTAAACATGTTGAGAGACGAAGTAGCTAAGCGATCAGGACTTGATCCTG 128
Query 140 AATCAATCAAACTAATTTTCGCCGGAAAAATCCTCAGAGACGACGGCGATGCTACTCTAA 199
|||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||
Sbjct 129 AATCAATCAAACTAATTTTCGCCGGAAAAATCCTGAAAGACGACGGCGATGCTACTCTAA 188
Query 200 CACTTGCGCAATTAGGTATTAAAGAAAACTCCAAGATCCTCTCTAGTCGTGGTA-CTGCT 258
| ||| ||||||| ||||||||||||||||| |||||||||||| ||||| | |||||
Sbjct 189 CGCTTTCGCAATTGGGTATTAAAGAAAACTCTAAGATCCTCTCTTGTCGT-CAAGCTGCT 247
Query 259 CCCGAAGAAGGCAAGTCTATCATGGCTGAAGAAGAAAGGTCTCGTCGTCTCTCTCGTGTC 318
|| |||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 248 CCTGAAGAAGGTAAGTCTATCATGGCTGAAGAAGAAAGGGCTCGTCGTCTCTCTCGTGTC 307
Query 319 AAAGCTGCTGCTACAGCTTTGTCCAAGAGACATGCTGATGGTTCGTTGCCGATCCAAGAC 378
|||||||| ||||||||||||||||||||||||||||||||||| || ||||||||||||
Sbjct 308 AAAGCTGCAGCTACAGCTTTGTCCAAGAGACATGCTGATGGTTCATTACCGATCCAAGAC 367
Query 379 TATAACATAGAGCTTGAAGATCAAGGAGGTCATAAAGTACAGTTTGGAACTGAGACTGAT 438
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 368 TATAACATAGAGCTGGAAGATCAAGGAGGTCATAAAGTACAGTTTGGAACTGAGACTGAT 427
Query 439 CAGAGTGCTGCAATGATGGGTCTTATGTTACATACAAAGGCAAAAAGTCTAATCGAAATG 498
|||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||
Sbjct 428 CAGAGTGCTGCAATGATGGGTCTTATGTTACATACAAAGGCAAAAAGTTTAATAGAAATT 487
Query 499 GAAATGTATTCTGATGCTGTTGAAGTGCTTGCTATGGCAGAGGAATCATTCTTGCTCTGT 558
||||||||||| ||||| |||||||| ||||||||||||||||||||||| |||||||||
Sbjct 488 GAAATGTATTCCGATGCAGTTGAAGTTCTTGCTATGGCAGAGGAATCATTTTTGCTCTGT 547
Query 559 GATCCCAAGATTCTTGAGCTTGTTGACAACCGCCCTATGATGGAAATAGACATTGTCTGG 618
|||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 548 GATCCCAAGATTCTCGAGCTTGTTGACAACCTCCCTATGATGGAAATAGACATTGTCTGG 607
Query 619 TGCTATTTCTTGCTCCGAGACGTCAAATGCCTTTCAGATGCTGGCGTTCGCCTTGAGAGA 678
|| |||||||||||||| ||| |||||||||||||||||||||| |||||||||| ||||
Sbjct 608 TGTTATTTCTTGCTCCGGGACATCAAATGCCTTTCAGATGCTGGTGTTCGCCTTGTGAGA 667
Query 679 GCAAGGAAGGGACTCGAGCGTGCTCATGGGAAGGATCTCTCTCGTGTGAGACTCCTTCAA 738
|||||||| ||||||||||||||||||||||||||||| ||||||||||| |||||||||
Sbjct 668 GCAAGGAAAGGACTCGAGCGTGCTCATGGGAAGGATCTTTCTCGTGTGAGGCTCCTTCAA 727
Query 739 GCAGGGCAAAGTCCAGAGATGGC-ACTATATTTGAGACTAGAGTTGCTAGAAGGTGTTGT 797
||||| ||||||||||||||||| | |||||||||| |||||||| ||||||||||| ||
Sbjct 728 GCAGGTCAAAGTCCAGAGATGGCTA-TATATTTGAGGCTAGAGTTACTAGAAGGTGTGGT 786
Query 798 GGCATATCACACTGGTCAGTATGATAAAGCCTTGAATGCACTGAAGTCTGCCCATGCGAA 857
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 787 GGCATATCACACTGGTCAGAATGATAAAGCCTTGAATGCACTGAAGTCTGCCCATGCGAA 846
Query 858 ATTCTTGCAGCTACAAATACCCGATGAAACACTGTCGCTTGTTATGGGTATGGGCTTCCA 917
|||||||||||||||||||||||||||||| |||||||| ||||||||||||||||| ||
Sbjct 847 ATTCTTGCAGCTACAAATACCCGATGAAACGCTGTCGCTAGTTATGGGTATGGGCTTTCA 906
Query 918 AGAGAAGGATGCTAAAAGAGCTTTGCGACTGAACAATCAGGATATTGCAAGTTCTGTTGA 977
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 907 AGAGAAGGATGCTAAAAGAGCTTTGCGACTGAACAATCAGGATATTGCAAGTTCTGTTGA 966
Query 978 TTTTCTTATCGAAGAGAGGGC-AAAAAGAGCCCAAAAGCGGGAACAGGATCTCCAGAGAC 1036
|||||||||||||||| |||| ||||| ||||||||||||||| |||||||| |||||||
Sbjct 967 TTTTCTTATCGAAGAGCGGGCGAAAAA-AGCCCAAAAGCGGGAGCAGGATCTTCAGAGAC 1025
Query 1037 AACAA-GAAATACTTGAGCAGAAAAAGTATGGAGTGACACCCATGAAGAAAGCTGTTGAT 1095
|| | ||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1026 AA-AGCGAAATACTTGAGCAGAAAAAGTATGGAGTAACACCCATGAAGAAAGCTGTTGAT 1084
Query 1096 ATGCAGATGCTTGAGAGGCTCGTCTCTATTGGATATGCGAGGGATCTTGCTGCTGAATCC 1155
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1085 ATGCAGATGCTTGAGAGGCTCGTCTCTATTGGATATGCGAGGGAACTTGCTGCTGAATCC 1144
Query 1156 CTCCGGAGAAATGAGAACGATATTCAGAAGGCCCTTGATATACTCACAGACCCAAAAGTT 1215
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1145 CTCCGGAGAAATGAGAACGATATTCAGAAGGCGCTTGATATACTCACAGACCCAAAAGTT 1204
Query 1216 AATTCGACGATACAGGCTTACATTGAATCGAGGAAAAGAAAACGACAAGAACAACTAGTA 1275
||||| |||||||||||||||||||||||||||||||||||||| ||||||||||| |||
Sbjct 1205 AATTCAACGATACAGGCTTACATTGAATCGAGGAAAAGAAAACGGCAAGAACAACTGGTA 1264
Query 1276 GGCATATCAGTTGATGAACTTGTGTCTATGGGATTTGAACGAGGAAGAGCAACCTCTGCT 1335
||||||||||||| |||||||||||||||||| ||||||||||||| ||| |||||||||
Sbjct 1265 GGCATATCAGTTGCTGAACTTGTGTCTATGGGCTTTGAACGAGGAAAAGCTACCTCTGCT 1324
Query 1336 TTGGAAGCTGGTGGCAACCGAGAAGATATAATCCAAAGGCTACTATCTGCATCAGAAGCA 1395
|||||||||||||||| ||||||||||| |||||||||||||||||||||||||| ||||
Sbjct 1325 TTGGAAGCTGGTGGCAGCCGAGAAGATACAATCCAAAGGCTACTATCTGCATCAGTAGCA 1384
Query 1396 AA-CCAAGGAACTAC--CT-C-TGCTGT-A-AA-TGCAACAAGTAGCACAAACAATGGGG 1447
|| ||| |||||||| || | | |||| | || ||||||||||||||||||||||| ||
Sbjct 1385 AATCCA-GGAACTACTACTACCT-CTGTTATAAATGCAACAAGTAGCACAAACAATGTGG 1442
Query 1448 GTGCGGAGAGCAGTGGTTTTGGGGGT 1473
|||||||||||||||||||||| |||
Sbjct 1443 GTGCGGAGAGCAGTGGTTTTGGCGGT 1468
Score = 375 bits (203), Expect = 6e-103
Identities = 240/258 (93%), Gaps = 2/258 (1%)
Strand=Plus/Plus
Query 1501 GGTGGGGCAGAGCAGGACTCTGAGATGAAAGATGAAACAACGGATGACATTGCAAACCGA 1560
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1466 GGTGGGGCAGAGCAGGACTCTGAGATGAAAGATGAAACAACGGATGACATTGCAAACCGA 1525
Query 1561 G-AAGGTACATCCAGTGATGTTGGGGAAGAAGAACGGGACTCTGAGATAGAAGATGAAAT 1619
| || | ||||||||||| | ||||||||| ||||||||||||||||||||||||||
Sbjct 1526 GCAA-GCACATCCAGTGACGGCATGGAAGAAGAGCGGGACTCTGAGATAGAAGATGAAAT 1584
Query 1620 AGCTGATGAGATTGCAAAGGTTGATGCTTTGTCGGCTTATGACATCAATCTTGACAAGGA 1679
||| || |||||||||| ||| |||||||||||||||||||| |||||||||||||||||
Sbjct 1585 AGCAGACGAGATTGCAAGGGTCGATGCTTTGTCGGCTTATGATATCAATCTTGACAAGGA 1644
Query 1680 AATTGAAGCTATAAATGAGTACCTGGCCATGCTGGATGCATCCCAGGAGTCTGGTTGAAG 1739
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1645 AATTGAAGCTATAAATGAGTACCTGGCCATGCTGGATGCATCCCAGGAGTCTTGTTGAAG 1704
Query 1740 AGCGGATTGTACTGGAGA 1757
||||| | || |||||||
Sbjct 1705 AGCGGGTCGTTCTGGAGA 1722
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 86897143395
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5