BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg931063
Length=811
Score E
Sequences producing significant alignments: (Bits) Value
AT2G12646.1 | Symbols: | PLATZ transcription factor family pro... 1290 0.0
> AT2G12646.1 | Symbols: | PLATZ transcription factor family protein
| chr2:5167042-5169185 REVERSE LENGTH=1071
Length=1071
Score = 1290 bits (698), Expect = 0.0
Identities = 772/809 (95%), Gaps = 0/809 (0%)
Strand=Plus/Plus
Query 3 ACTTTGAGTTGTGTCCTCATGGGAATTCAGAAACCAGCATGGTTGGATGCGCTATACGCA 62
||||| ||||| ||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 146 ACTTTCAGTTGAGTCCTCATGGGAATTCAGAAACCGGCATGGTTGGATGCGCTATACGCA 205
Query 63 GAGAAGTTCTTCGTAGGATGTCCTTACCATGAGACAGCAAAGAAGAACGAGAGGAACGTG 122
|||||||||||||| |||||||| ||||||||||| || |||||||||||||||||||||
Sbjct 206 GAGAAGTTCTTCGTGGGATGTCCATACCATGAGACGGCGAAGAAGAACGAGAGGAACGTG 265
Query 123 TGTTGTCTTGATTGTTGCACCAGTCTCTGTCCTCACTGTGTACCCTCTCATAGATTTCAT 182
||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||
Sbjct 266 TGTTGTCTTGATTGTTGCACCAGTCTCTGCCCTCACTGTGTACCCTCTCATAGATTCCAT 325
Query 183 AGACTCCTTCAAGTTCGCCGTTATGTGTATCACGATGTTGTTCGGCTTGAAGATCTTCAA 242
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 326 AGACTCCTTCAAGTTCGCCGTTATGTGTATCACGACGTTGTTCGGCTTGAAGATCTTCAG 385
Query 243 AAACTAATCGACTGCTCTAACGTTCAAGCTTATACTATAAATAGTGCAAAAGTGGTGTTC 302
||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 386 AAACTCATCGACTGCTCTAACGTTCAAGCTTATACAATAAATAGTGCAAAAGTGGTGTTC 445
Query 303 ATCAAGAAGAGACCACAAAATAGACAATTCAAAGGAGCTGGCAACTATTGCACATCATGT 362
||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct 446 ATCAAGAAGAGACCACAAAATAGACAATTCAAAGGAGCTGGCAACTATTGCACTTCTTGT 505
Query 363 GACCGAAGTCTTCAAGAACCTTATATCCATTGCTCCTTGGGTTGTAAGGTGGACTTTGTG 422
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 506 GACCGAAGTCTTCAAGAACCTTATATCCATTGCTCCTTGGGTTGTAAGGTGGACTTTGTG 565
Query 423 ATGAAACGTTATAGGGACTTAACCCCATTCCTAAAGCCATGTCACACTCTAACCCTAGGT 482
||||||||||| |||||| ||||||||||||| |||||||| ||||||||||||||||||
Sbjct 566 ATGAAACGTTACAGGGACATAACCCCATTCCTCAAGCCATGCCACACTCTAACCCTAGGT 625
Query 483 CCTGACTACATCATCCCACAAGACTTACTGACGGATGATGATGTGGCGGTCTACGAGACT 542
|||||||||||||||||||||||||||||||| |||||||| ||||||| ||||||||||
Sbjct 626 CCTGACTACATCATCCCACAAGACTTACTGACAGATGATGAAGTGGCGGCCTACGAGACT 685
Query 543 CCTAGATCAACTGTGGTAGACGGGGATGAGTCCATGAGCTGGTCCTCCGCTTCCTCGGAT 602
||| ||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||
Sbjct 686 CCTCGATCAACTGTGGTAGACGGCGATGAGTCCATGAGCTGGTCCTCAGCTTCCTCGGAT 745
Query 603 AACAACAATACGGGTGCGGCTGCTGCTTATGCCGCGACCACAACCCATGTCGTGAGGAAA 662
||||||||| |||||||||| |||||||||||||| ||||| ||||||||||||||||||
Sbjct 746 AACAACAATGCGGGTGCGGCGGCTGCTTATGCCGCAACCACCACCCATGTCGTGAGGAAA 805
Query 663 AAGCGGACCGGTTTTTGCCTTTGCGCCAAATCGGCTAATAGTTATAAAGAAGTTTCGGAG 722
|| |||| ||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 806 AAAAGGACTGGTTTTTGCCTTTGCGCTAAATCGGCTAATAGTTATAAAGAAGTTTCGGAG 865
Query 723 GATCCTGACGATATTTCTACTTGCATTAATCGGCGAAAAGGCGTTCCTCAACGATCTCCT 782
|||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||
Sbjct 866 GATCCTGACGATATTTCTGCTTGCATCAATCGGCGAAAAGGCGTTCCTCAACGATCTCCT 925
Query 783 CTCTGTTAACGTACTCTTTTATTTTTTGT 811
|||||||||||||||||||| || |||||
Sbjct 926 CTCTGTTAACGTACTCTTTTCTTCTTTGT 954
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39484039542
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5