BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg931073
Length=741
Score E
Sequences producing significant alignments: (Bits) Value
AT2G12940.1 | Symbols: UNE4 | Basic-leucine zipper (bZIP) trans... 586 1e-166
AT2G13150.1 | Symbols: | Basic-leucine zipper (bZIP) transcrip... 569 1e-161
AT2G12900.1 | Symbols: | Basic-leucine zipper (bZIP) transcrip... 257 9e-68
AT2G13145.1 | Symbols: | pseudogene, hypothetical protein | ch... 128 7e-29
AT2G13115.1 | Symbols: | pseudogene of bZIP family transcripti... 119 4e-26
> AT2G12940.1 | Symbols: UNE4 | Basic-leucine zipper (bZIP) transcription
factor family protein | chr2:5317475-5319090 FORWARD
LENGTH=924
Length=924
Score = 586 bits (317), Expect = 1e-166
Identities = 590/718 (82%), Gaps = 34/718 (5%)
Strand=Plus/Plus
Query 4 TCTTCTTCAATCCTTAACAATGAATGGATCCAACAATATCACTCCTTCGGGACCACGGTT 63
|||||||||||| |||||||||||||||||| |||||| |||||| || ||||| |||
Sbjct 20 TCTTCTTCAATCTTTAACAATGAATGGATCCGACAATACCACTCCGTCCCGACCATGGTC 79
Query 64 GATGACTCAACCATCGCCTGCC-T-T-GTCCTTGCCCCCGTTGAGCCGCCCTTCTTCGTC 120
||| ||||| || || | |||| | | ||||||||||| |||| |||||||| ||||
Sbjct 80 GATAACTCAGCCTTCACTTGCCTTCTCCTCCTTGCCCCCATTGA---GCCCTTCTCCGTC 136
Query 121 ATCATTCCGTCGCAATTCATTACCATCAATGATCCTTTCTCCGTCAGC-TCATGTGGAGA 179
|||| |||||||||||||||||||| ||| | ||||||| | || | ||||||
Sbjct 137 GTCATCCCGTCGCAATTCATTACCAT---TGA---TGAATCCGTCAACTTC-TATGGAGA 189
Query 180 GTAGAGACTCTTCCATTAGGGATAAGAAAAACCCTTCATTGCCTCCTCTGGATGTGAA-A 238
|||||||||||||||| ||| |||||||||| ||| |||||||||| ||| |||||| |
Sbjct 190 GTAGAGACTCTTCCATGAGGTTTAAGAAAAACTCTTTATTGCCTCCTTTGGGTGTGAAGA 249
Query 239 AGAAGAGCAGAGAAAGACATTGAACCTTTAAGGAGACACAATAGGAGTGTTTCAATGGAT 298
| || |||| ||||| |||| ||| ||| ||||||| | ||||||||||||||||||
Sbjct 250 A-AATAGCACCCAAAGATATTGGACCCCTAAAGAGACACTACAGGAGTGTTTCAATGGAT 308
Query 299 AGTTTTTTCAATGACTTACTGAAGTTGACTCTTTCTCAGGGTAACGTTTCC-TCTTCAAG 357
|||| ||| | ||||||||||||| | |||| ||||| ||||||| ||| ||||||||
Sbjct 309 AGTTGTTTGAGTGACTTACTGAAGCTAACTCCTTCTCCGGGTAAC-ACTCCATCTTCAAG 367
Query 358 TTTGGTTGATGGAGACAAGAATGCTTCC-GGCCTTGAGTTTGGTAG-CAGTGATTATACT 415
||||||||||||||| ||||||||||| || || ||||||| | | || ||||||||||
Sbjct 368 ATTGGTTGATGGAGACCAGAATGCTTCCAGG-CTAGAGTTTGAT-GCCAATGATTATACT 425
Query 416 GATGATGAGTTGAATATGATTGCGGAGAGTACCAAACTTAAAAAGATAGCATCT-GATCC 474
|||||||| ||||||| ||| || |||||| |||||||||| || | |||| | |||||
Sbjct 426 GATGATGAATTGAATAAGATAGCAAAGAGTAACAAACTTAAAGAGGTTGCAT-TGGATCC 484
Query 475 --AGTGAAAGTCAGAAGAATCTTGGCGAACCGAGTA-TCAATGGTAC-TTTCAAAGCAGA 530
|| | ||||||||||||||||| ||| |||| | || | || ||| ||||||||
Sbjct 485 TAAG-G-AAGTCAGAAGAATCTTGAAGAATCGAG-AGTCCGCAGCACATTT-AAAGCAGA 540
Query 531 GGCAGTCACAGTATGTTATTGACTTGGAACAGAAAATAAAATTTCTTGAGAACGAAAATG 590
| ||| ||||||| | ||| |||||||||| | |||||| ||| |||||||||||||||
Sbjct 541 AGAAGTTACAGTATATGATTAACTTGGAACACAGAATAAACTTTGTTGAGAACGAAAATG 600
Query 591 CATCAATGTCTGAAAAGATCACGCTTTTGGAGAATGATAAAACAATGATGATGAATGAGA 650
| ||||| | ||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 601 CTTCAATATTTGAAAAGATCAAGCTTTTGGAGAATGATAAAACAATGATGATGAATGAGA 660
Query 651 AGAAGGAAATCACGATTAAAATTGAATCGTTGGAGCA-ACAAGTGCAACTTCGTGATG 707
|||||||||||| |||| |||||||||| ||||| | ||| | |||||||| ||||
Sbjct 661 AGAAGGAAATCATGATTCGAATTGAATCGATGGAG-ATACAGGCACAACTTCGGGATG 717
> AT2G13150.1 | Symbols: | Basic-leucine zipper (bZIP) transcription
factor family protein | chr2:5437056-5438459 FORWARD
LENGTH=789
Length=789
Score = 569 bits (308), Expect = 1e-161
Identities = 576/701 (82%), Gaps = 35/701 (5%)
Strand=Plus/Plus
Query 23 ATGAATGGATCCAACAATATCACTCCTTCGGGACCACGGTTGATGACTCAACCATCGCCT 82
|||||||||||| |||||| ||||||||| ||||||||| ||| ||||| || || | |
Sbjct 1 ATGAATGGATCCGACAATAGCACTCCTTCCCGACCACGGTCGATAACTCAGCCTTCACTT 60
Query 83 GCC-T-T-GTCCTTGCCCCCGTTGAGCCGCCCTTCTTCGTCATCATTCCGTCGCAATTCA 139
||| | | ||||||||||| |||| | |||||| |||| |||| |||||||||||||
Sbjct 61 GCCTTCTCTTCCTTGCCCCCATTGA---GTCCTTCTCCGTCGTCATCCCGTCGCAATTCA 117
Query 140 TTACCATCAATGATCCTTTCTCCGTCAGC-TCATGTGGAGAGTAGAGACTCTTCCATTAG 198
|||||| |||| | ||||| || || |||||||||||||||||||||||||||
Sbjct 118 ATACCAT---TGAT--GAAC-CCGTCTGCTTC-TGTGGAGAGTAGAGACTCTTCCATTAG 170
Query 199 GGATAAGAA-AAACCCTTCATTGCCTCCTCTG-GATGTGAAAAGAAGAGCAGAGAAAGAC 256
|| |||||| ||| | || |||||||||| || | |||||| ||||||||| ||||||
Sbjct 171 GGTTAAGAAGAAATCTTT-ATTGCCTCCTTTGTG-TGTGAAGAGAAGAGCACCCAAAGAC 228
Query 257 -A--TTGAACCTTT-AAGGAGACACAATAGGAGTGTTTCAATGGATAGTTTTTTCAATGA 312
| |||||||||| ||| |||||| | |||||| ||||| ||||||||| ||| | |||
Sbjct 229 GACATTGAACCTTTCAAG-AGACACTACAGGAGTCTTTCAGTGGATAGTTGTTTGAGTGA 287
Query 313 CTTACTGAAGTTGACTCTTTCTCAGGGTAACGTTTCCTCTTCAAGTTTGGTTGATGGAGA 372
|||||| || || ||| ||||| | |||||||||||||||||| | ||||||||||||
Sbjct 288 CTTACTAAAACTGCCTCCTTCTCCGAATAACGTTTCCTCTTCAAGATCGGTTGATGGAGA 347
Query 373 -CAAGAATGCTTCCG-GCCTTGAGTTTGGTAGCAGTGATTATACTGATGATGAGTTGAAT 430
||| |||||||||| || ||||||||| || ||||| ||||||||||||||| ||||||
Sbjct 348 ACAA-AATGCTTCCGAGC-TTGAGTTTGATACCAGTGTTTATACTGATGATGAATTGAAT 405
Query 431 ATGATTGCGGAGAGTACCAAACTTAAAAAGATAGCATCTGATCC-A-GTGAAAGTCAGAA 488
| ||| || ||||||||||||||||| || | ||||| ||||| | | ||| |||||||
Sbjct 406 AAGATAGCAAAGAGTACCAAACTTAAAGAGGTTGCATCGGATCCTAAG-GAA-GTCAGAA 463
Query 489 GAATCTTGGCGAACCGAGTA-TCAATGGTACTTTCAAAGCAGAGGCAGTCACAGTATGTT 547
|||||||| || | || | || || || ||||||||||| | ||| ||| ||| |
Sbjct 464 GAATCTTGAAAAATCAAG-AGTCCGCGGCACGTTCAAAGCAGAAGAAGTTACAATATATG 522
Query 548 ATTGACTTGGAACAGAAAATAAAATTTCTTGAGAACGAAAATGCATCAATGTCTGAAAAG 607
||| ||||||||| |||||||| |||||||||||| ||||||| ||||| | |||||||
Sbjct 523 ATTAACTTGGAACTCAAAATAAACTTTCTTGAGAACAAAAATGCTTCAATATTTGAAAAG 582
Query 608 ATCACGCTTTTGGAGAATGATAAAACAATGATGATGAATGAGAAGAAGGAAATCACGATT 667
|||| |||||||||||||||||||||||||| ||||||||||||||||||||||| ||||
Sbjct 583 ATCAAGCTTTTGGAGAATGATAAAACAATGAGGATGAATGAGAAGAAGGAAATCATGATT 642
Query 668 AAAATTGAATCGTTGGAGCAACAAGT-GCAACTTCGTGATG 707
||||||||| ||||||||||| | | ||||||||||||
Sbjct 643 CGAATTGAATCATTGGAGCAACACGCCG-AACTTCGTGATG 682
> AT2G12900.1 | Symbols: | Basic-leucine zipper (bZIP) transcription
factor family protein | chr2:5293897-5295480 FORWARD
LENGTH=795
Length=795
Score = 257 bits (139), Expect = 9e-68
Identities = 233/278 (84%), Gaps = 8/278 (3%)
Strand=Plus/Plus
Query 434 ATTGCGGAGAGTACCAAACTTAAAAAGATAGCATCTGATCC-AGTGAAAGTCAGAAGAAT 492
||||| |||||||||||||| || |||| | ||||||||| | |||||||||||||||
Sbjct 310 ATTGCAAAGAGTACCAAACTTCAAGAGATTGTATCTGATCCTA-AGAAAGTCAGAAGAAT 368
Query 493 CTTGGCGAACCGAGTA-TCAATGGTACT-TTCAAAGCAGAGGCAGTCACAGTATGTTATT 550
|||| || |||| | | | | | | ||||||||||||| ||| | |||| | |||
Sbjct 369 CTTGAAAAATCGAG-AGTTAGCCGCA-TCTTCAAAGCAGAGGAAGTTAAAGTACATGATT 426
Query 551 GACTTGGAACAGAAAATAAAATTTCTTGAGAACGAAAATGCATCAATGTCTGAAAAGATC 610
||||||||||| | ||||||||||||||||||| ||||||| | ||| | ||||||||||
Sbjct 427 GACTTGGAACATAGAATAAAATTTCTTGAGAACAAAAATGCTTTAATATTTGAAAAGATC 486
Query 611 ACGCTTTTGGAGAATGATAAAACAATGA-TGATGAATGAGAAGAAGGAAATCACGATTAA 669
| ||||||||||| ||||||||||| | ||||||||||||||||||||||||||||| |
Sbjct 487 AAACTTTTGGAGAAGGATAAAACAAT-ATTGATGAATGAGAAGAAGGAAATCACGATTCA 545
Query 670 AATTGAATCGTTGGAGCAACAAGTGCAACTTCGTGATG 707
||||||||| ||||||||||| | |||||||||||||
Sbjct 546 AATTGAATCATTGGAGCAACAGGCCCAACTTCGTGATG 583
Score = 124 bits (67), Expect = 9e-28
Identities = 89/99 (90%), Gaps = 4/99 (4%)
Strand=Plus/Plus
Query 358 TTTGGTTGATGGAGACA-AGAATGCTTCC-GGCCTTGAGTTTGGTAGCAGTGATTATACT 415
||||||||||||||| | || |||||||| || || ||||||||||||||||||||||||
Sbjct 207 TTTGGTTGATGGAGA-AGAGGATGCTTCCTGG-CTCGAGTTTGGTAGCAGTGATTATACT 264
Query 416 GATGATGAGTTGAATATGATTGCGGAGAGTACCAAACTT 454
|||||||| ||||||| |||||| ||||||||||||||
Sbjct 265 GATGATGAATTGAATAAGATTGCAAAGAGTACCAAACTT 303
> AT2G13145.1 | Symbols: | pseudogene, hypothetical protein |
chr2:5428731-5430290 FORWARD LENGTH=1560
Length=1560
Score = 128 bits (69), Expect = 7e-29
Identities = 103/120 (86%), Gaps = 0/120 (0%)
Strand=Plus/Plus
Query 621 AGAATGATAAAACAATGATGATGAATGAGAAGAAGGAAATCACGATTAAAATTGAATCGT 680
||||||||||||||||||||||||||||||||||| |||||| |||| ||||||||| |
Sbjct 777 AGAATGATAAAACAATGATGATGAATGAGAAGAAGAAAATCATGATTCGAATTGAATCAT 836
Query 681 TGGAGCAACAAGTGCAACTTCGTGATGGTACATCATTTTAATTTCTATCGATACATTAGC 740
|||||||| | |||||||| |||| ||||| || ||||||||| || |||| |||||
Sbjct 837 TGGAGCAATTGGCCCAACTTCGGGATGTTACATTATCTTAATTTCTGTCAATACTTTAGC 896
> AT2G13115.1 | Symbols: | pseudogene of bZIP family transcription
factor | chr2:5401088-5403027 FORWARD LENGTH=1940
Length=1940
Score = 119 bits (64), Expect = 4e-26
Identities = 85/95 (89%), Gaps = 2/95 (2%)
Strand=Plus/Plus
Query 396 TTGGTAGCAGTGATTATACTGATGATGAGTTGAATATGATTGCGGAGAGTACCAAACTTA 455
|||||||||||||||||||||||||||| ||||||| |||||| ||||||||||||||
Sbjct 344 TTGGTAGCAGTGATTATACTGATGATGAATTGAATAAGATTGCAAAGAGTACCAAACTTC 403
Query 456 AAAAGATAGCATCTGATCC-AGTGAAAGTCAGAAG 489
|| |||| ||||||||||| | ||||||||||||
Sbjct 404 AAGAGATCGCATCTGATCCTAA-GAAAGTCAGAAG 437
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 35967649252
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5