BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg931079

Length=374
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G13295.1 | Symbols:  | Encodes a Protease inhibitor/seed sto...   496    8e-140


> AT2G13295.1 | Symbols:  | Encodes a Protease inhibitor/seed storage/LTP 
family protein | chr2:5514094-5514635 REVERSE LENGTH=469
Length=469

 Score =  496 bits (268),  Expect = 8e-140
 Identities = 300/316 (95%), Gaps = 0/316 (0%)
 Strand=Plus/Plus

Query  24   ATGATGAGAGCTTATACTATAGTCTCTATGTTTATGTTAACATTGTTAGTGACTAGAGTA  83
            ||| ||||||||||||||||||||||||||||| |||||||| |||| ||||||||||||
Sbjct  1    ATGGTGAGAGCTTATACTATAGTCTCTATGTTTTTGTTAACACTGTTGGTGACTAGAGTA  60

Query  84   ACATCTTCCCAAGTTGATGCTTCGTGTAGTTGGACAGAGATTTCTGAAGAATATGATTAT  143
            ||||||||||||||| ||||| |||||| |||||||||||||||||||||||||||||||
Sbjct  61   ACATCTTCCCAAGTTAATGCTCCGTGTACTTGGACAGAGATTTCTGAAGAATATGATTAT  120

Query  144  TGTGGCGATTCTCTCATGCGCGGTGTTCCTTGGGTTTTTCCATTGAAAGTTTGTTGTGAT  203
            |||||||||||||||| ||| || ||||||||||||| ||||||||||||||||||||||
Sbjct  121  TGTGGCGATTCTCTCACGCGTGGCGTTCCTTGGGTTTCTCCATTGAAAGTTTGTTGTGAT  180

Query  204  ACTATAAAATTGAACAAGATGAAATGCATATGCCAAAAGGTTACAAAAATGTTTTCGCAA  263
            ||||||||||||||||||||||||||||||||||||   |||||||||| ||||||||||
Sbjct  181  ACTATAAAATTGAACAAGATGAAATGCATATGCCAAGTCGTTACAAAAACGTTTTCGCAA  240

Query  264  AACTTTGACTTTAATAAGCTCTCCAAACTCTCTCATGCATGCGGCGACCTCTTAGTCCCT  323
            |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  241  AACTTTGACTTTTATAAGCTCTCCAAACTCTCTCATGCATGCGGCGACCTCTTAGTCCCT  300

Query  324  GGATCTTATTGCGGAG  339
            ||||||||||||||||
Sbjct  301  GGATCTTATTGCGGAG  316



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 17593712150


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5