BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg931085
Length=723
Score E
Sequences producing significant alignments: (Bits) Value
AT2G39580.1 | Symbols: | CONTAINS InterPro DOMAIN/s: Putative ... 590 8e-168
AT3G61760.1 | Symbols: ADL1B, DL1B | DYNAMIN-like 1B | chr3:228... 191 9e-48
AT5G62190.1 | Symbols: PRH75 | DEAD box RNA helicase (PRH75) | ... 172 3e-42
> AT2G39580.1 | Symbols: | CONTAINS InterPro DOMAIN/s: Putative
zinc-finger domain (InterPro:IPR019607); Has 249 Blast hits
to 219 proteins in 85 species: Archae - 0; Bacteria - 144;
Metazoa - 29; Fungi - 8; Plants - 50; Viruses - 0; Other Eukaryotes
- 18 (source: NCBI BLink). | chr2:16510425-16517073
FORWARD LENGTH=4974
Length=4974
Score = 590 bits (319), Expect = 8e-168
Identities = 352/368 (96%), Gaps = 1/368 (0%)
Strand=Plus/Plus
Query 260 AATT-TCAGTCATCTATAGATATGGAGTCCCATAGGAGTTCACCAGAGAATGACCTTTTA 318
|||| ||||| ||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 2255 AATTATCAGTTATCTATAGATATGGAGTCCCATAGGAGTTCACCAGAGAATGCCCTTTTA 2314
Query 319 TCGTCTGTAGCTTTGTCAGGTCCTTTATTTCGGAGCACAATCTATCATCTGAAAGTACCA 378
||||||||||| ||||| |||||||||||||||||||||||||||||| ||||||| |||
Sbjct 2315 TCGTCTGTAGCGTTGTCCGGTCCTTTATTTCGGAGCACAATCTATCATTTGAAAGTCCCA 2374
Query 379 GGGTCTTCAATTACGTCTCTGGGACCAGAATATACACTTCAAAACAAGTCATATAGCCTA 438
|||||||||||||| ||||||||||||||||||| ||||||||||||| |||||||||||
Sbjct 2375 GGGTCTTCAATTACATCTCTGGGACCAGAATATATACTTCAAAACAAGACATATAGCCTA 2434
Query 439 TATAGTGATAAAAGACAATGTAGAAGCTTGACTGAAACTACAGTATATGAGaaaaaaaTT 498
||||||||||||||||||||||| |||||||| ||||||| |||||||||||||||||||
Sbjct 2435 TATAGTGATAAAAGACAATGTAGGAGCTTGACGGAAACTATAGTATATGAGAAAAAAATT 2494
Query 499 GGCTTCTACACCTTTTATTTGAAGGTGGACCCTTCTTGGCCTCTCTGCATGTACGAGTTA 558
||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2495 GGCTTCTACACCTGTAATTTGAAGGTGGACCCTTCTTGGCCTCTCTGCATGTACGAGTTA 2554
Query 559 CGTGGAAGGTGCAATAATGATGAATGTTCTTGGCAACATTTCAAGGATTTCTCTGATGAC 618
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 2555 CGTGGAAGGTGCAATAACGATGAATGTTCTTGGCAACATTTCAAGGATTTCTCTGATGAC 2614
Query 619 AGTTTGCA 626
||||||||
Sbjct 2615 AGTTTGCA 2622
> AT3G61760.1 | Symbols: ADL1B, DL1B | DYNAMIN-like 1B | chr3:22860514-22864153
REVERSE LENGTH=1926
Length=1926
Score = 191 bits (103), Expect = 9e-48
Identities = 115/121 (95%), Gaps = 0/121 (0%)
Strand=Plus/Plus
Query 5 TTAGGTTTGATTTTGTTATGGAGATTTTGATTGCGCTTGTGAACAAGATTCAGAGAGCCT 64
|||| ||||||| |||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 45 TTAGTTTTGATTCCGTTATGGAGAGTTTGATTGCGCTTGTGAACAAGATTCAGAGAGCCT 104
Query 65 GTACGGCTCTGGGAGATTACGGCGAGGGAAGCTCCCTCCCAACTCTGTGGGACTCATTGC 124
||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||
Sbjct 105 GTACGGCTCTGGGAGATCACGGCGAGGGAAGCTCCCTCCCAACTCTCTGGGACTCATTGC 164
Query 125 C 125
|
Sbjct 165 C 165
> AT5G62190.1 | Symbols: PRH75 | DEAD box RNA helicase (PRH75)
| chr5:24980268-24983973 REVERSE LENGTH=2384
Length=2384
Score = 172 bits (93), Expect = 3e-42
Identities = 99/102 (97%), Gaps = 0/102 (0%)
Strand=Plus/Plus
Query 157 GTTACTCTTGCTGGATTTAGGAATGGCAAGTTTTCGACATTGGTGGCTACAAATGTTGCT 216
||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||
Sbjct 1253 GTTACTCTTGCTGGATTTAGGAATGGCAAGTTTGCAACATTGGTGGCTACAAATGTTGCT 1312
Query 217 GCTCGTGGTCTAGATATCAATGATGTGCAGTTAATTATTCAG 258
|||||||||||||||||||||||||||||||||||||| |||
Sbjct 1313 GCTCGTGGTCTAGATATCAATGATGTGCAGTTAATTATCCAG 1354
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 35063434606
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5