BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg931095

Length=300
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G13542.1 | Symbols:  | Encodes a defensin-like (DEFL) family...   222    1e-57


> AT2G13542.1 | Symbols:  | Encodes a defensin-like (DEFL) family 
protein. | chr2:5643169-5643615 REVERSE LENGTH=231
Length=231

 Score =  222 bits (120),  Expect = 1e-57
 Identities = 144/156 (92%), Gaps = 0/156 (0%)
 Strand=Plus/Plus

Query  111  ATCCAGCAATATGATCGTTGCACTGGGGCATGTTCGAGATTTTACGGAAATCAGCAATGT  170
            ||||| |||||||||||||||| |||| |||||| |||||||||||||||||| ||||||
Sbjct  70   ATCCAACAATATGATCGTTGCATTGGGCCATGTTTGAGATTTTACGGAAATCATCAATGT  129

Query  171  TACGAAAACTGTAGAAAGGTGAAGTATGATGGAGGACAGTGTGATTTTGTTACAAAAGGT  230
            ||| ||||||||||||||| |||||||||||||||||||||||||||||||| |||||||
Sbjct  130  TACAAAAACTGTAGAAAGGCGAAGTATGATGGAGGACAGTGTGATTTTGTTAAAAAAGGT  189

Query  231  GAAAATTTACCAGAATGTTGTTGCTACTACAATAAA  266
            ||||| |||||||||||||||||||| || || |||
Sbjct  190  GAAAAATTACCAGAATGTTGTTGCTATTATAACAAA  225



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 13873898724


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5