BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg931097

Length=202
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G13970.1 | Symbols:  | Protein of unknown function (DUF1336)...   285    1e-76


> AT1G13970.1 | Symbols:  | Protein of unknown function (DUF1336) 
| chr1:4779523-4782542 REVERSE LENGTH=2050
Length=2050

 Score =  285 bits (154),  Expect = 1e-76
 Identities = 173/182 (95%), Gaps = 1/182 (1%)
 Strand=Plus/Plus

Query  22    TAAAATGATCAACCACATTGCTCAACACATTGAGCTTCCTAATCCGAAACCGGCGTCATC  81
             ||||| |||||||||||||||||||||||||||||||||||||  ||||||||| |||||
Sbjct  1174  TAAAAAGATCAACCACATTGCTCAACACATTGAGCTTCCTAATTTGAAACCGGCATCATC  1233

Query  82    ACAAGTCTGCGATATCCCCAATCTCTTGATTGTGAATATCCAGCTTCCAATGTATCCAAC  141
             |||||||||||||||||||||||| ||||| ||||| |||||||||||||||||||||||
Sbjct  1234  ACAAGTCTGCGATATCCCCAATCTTTTGATAGTGAACATCCAGCTTCCAATGTATCCAAC  1293

Query  142   CTCTATGTT-GGTGACTATGATGGTGAAGGACTTAGCTTAGTCTTGTACTTCAAACGCAA  200
             ||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct  1294  CTCTATGTTTGGTGACTATGATGGTGAAGGACTTAGCTTAGTATTGTACTTCAAACGCAA  1353

Query  201   TG  202
             ||
Sbjct  1354  TG  1355



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 9003941829


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5