BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg931098

Length=368
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G13970.1 | Symbols:  | Protein of unknown function (DUF1336)...   368    2e-101


> AT1G13970.1 | Symbols:  | Protein of unknown function (DUF1336) 
| chr1:4779523-4782542 REVERSE LENGTH=2050
Length=2050

 Score =  368 bits (199),  Expect = 2e-101
 Identities = 285/322 (89%), Gaps = 23/322 (7%)
 Strand=Plus/Plus

Query  13    AGAGATTTATGGATGATGAAATGGAGAAAGTCAAAGGATTCACAAGAGAATCAACAGTTC  72
             ||||||| ||||| ||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct  1401  AGAGATTCATGGAAGATGAAATGGAGAAAGTAAAAGGATTCACAAGAGAATCAACAGTTC  1460

Query  73    CGTTCAGAGAGAGGTTAAAGATTATGGCAGGTTTGGTAAATCCTGAGGATCTT-CAGCTA  131
             | |||||||||||||||||||| ||||||||||||||||||||||||||| || ||||||
Sbjct  1461  CATTCAGAGAGAGGTTAAAGATCATGGCAGGTTTGGTAAATCCTGAGGAT-TTCCAGCTA  1519

Query  132   AGTTCTACTGAGAGAAAACTAATCACAGCTTACAACGATAGACCGGTTCTTTCTCGTCCG  191
             |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct  1520  AGTTCTACTGAGAGAAAACTTATCACAGCTTACAACGATAGACCGGTTCTTTCTCGTCCG  1579

Query  192   CAAC--G----C---CA---AC-A--C------GAGATCGATTTGGATATACACAGATTC  230
             ||||  |    |   ||   || |  |      ||||| |||||||||||||||||||||
Sbjct  1580  CAACACGATTTCTTTCAGGGACCAAACTACTTTGAGATAGATTTGGATATACACAGATTC  1639

Query  231   AGTTACATATCGAGGAGAGGACTGGAATCTTTCAGGGATCGTATCAAGAATGGGATTCTT  290
             |||||||| ||||||| |||||| |||||||||||||||||||||||||| |||||||||
Sbjct  1640  AGTTACATTTCGAGGAAAGGACTCGAATCTTTCAGGGATCGTATCAAGAACGGGATTCTT  1699

Query  291   GATCTGGGTTTAACTATTCAGG  312
             ||| |||| ||||| |||||||
Sbjct  1700  GATTTGGGATTAACAATTCAGG  1721



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 17292105656


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5