BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg931100
Length=682
Score E
Sequences producing significant alignments: (Bits) Value
AT2G13570.1 | Symbols: NF-YB7 | nuclear factor Y, subunit B7 | ... 959 0.0
> AT2G13570.1 | Symbols: NF-YB7 | nuclear factor Y, subunit B7
| chr2:5655842-5656489 REVERSE LENGTH=648
Length=648
Score = 959 bits (519), Expect = 0.0
Identities = 618/660 (94%), Gaps = 30/660 (5%)
Strand=Plus/Plus
Query 21 ATGACTGAGGAGAGCCCAGAAGAGGATCATGGGTCTCC------AGCCGAAACAAATCCA 74
||||||||||||||||||||||| |||||||||||||| ||| ||||||||||||
Sbjct 1 ATGACTGAGGAGAGCCCAGAAGAAGATCATGGGTCTCCTGGAGTAGCTGAAACAAATCCA 60
Query 75 GGAAGCCCTTCTTCAAAG----------AC--CAACAACAACAAAGAACAAGACCGGTTT 122
|||||||||||||||||| || ||||||||||||||||||||||||||||
Sbjct 61 GGAAGCCCTTCTTCAAAGACCAACAACAACAACAACAACAACAAAGAACAAGACCGGTTT 120
Query 123 CTTCCCATTGCAAATGTCGGAAGGATCATGAAAAAAGTTCTTCCCGGTAACGGTAAGATC 182
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 CTTCCCATTGCGAATGTCGGAAGGATCATGAAAAAAGTTCTTCCCGGTAACGGTAAGATC 180
Query 183 TCAAAAGACGCCAAAGAAACCGTTCAAGAATGTGTCTCAGAGTTCATTAGTTTTGTCACT 242
||||||||||| |||||||||||||||||||||||||| |||||||||||||| ||||||
Sbjct 181 TCAAAAGACGCTAAAGAAACCGTTCAAGAATGTGTCTCGGAGTTCATTAGTTTCGTCACT 240
Query 243 GGTGAAGCTTCTGATAAGTGTCAAAGAGAGAAGAGGAAGACCATCAATGGAGATGATATC 302
|||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 241 GGTGAAGCTTCTGACAAGTGTCAAAGAGAAAAGAGGAAGACCATCAATGGAGATGATATC 300
Query 303 ATTTGGGCTATCACAACTCTCGGTTTCGAAGACTACGTGGCTCCATTAAAGGTCTACCTC 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 ATTTGGGCTATCACAACTCTCGGTTTCGAAGACTACGTGGCTCCATTAAAGGTCTACCTC 360
Query 363 TGCAAATATAGAGACACCGAAGGAGAGAAAGTTAACAGCCcaaaacaacaacaacaaaga 422
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 TGCAAATATAGAGACACCGAAGGAGAGAAAGTTAACAGCCCAAAACAACAACAACAAAGA 420
Query 423 caacaacaacaacaacaacaacagattcaacaacaGAATCATCATAATTATCAGTTTCAA 482
||||||||||| || |||||||||||||||||||||||||||||||||||||
Sbjct 421 CAACAACAACAGCA---------GATTCAACAACAGAATCATCATAATTATCAGTTTCAA 471
Query 483 GAACAAGACCAAAACAATAACAACATGTCATGTACTAGTTACATCTCTCATCATCATCCT 542
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 472 GAACAAGACCAAAACAATAACAACATGTCATGTACTAGTTACATCTCTCATCATCATCCT 531
Query 543 TCTCCATTCCTACCGGTGGATCATCAACCATTTCCCAATATTGCTTTCTCTCCTAAATCA 602
|||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 532 TCTCCATTCCTACCAGTGGATCATCAACCTTTTCCCAATATTGCTTTCTCTCCTAAATCA 591
Query 603 TTGCAGAAACAGTTCCCGCAGCAGCAGCATGATAATAACATTGATTCCATTCACTGGTGA 662
|||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||
Sbjct 592 TTGCAGAAACAGTTCCCGCAGCAGCA---TGATAATAACATTGATTCAATTCACTGGTGA 648
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33003834579
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5