BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg931106

Length=395
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G71190.1 | Symbols: SAG18 | senescence associated gene 18 | ...   174    5e-43


> AT1G71190.1 | Symbols: SAG18 | senescence associated gene 18 
| chr1:26833406-26835032 REVERSE LENGTH=1087
Length=1087

 Score =  174 bits (94),  Expect = 5e-43
 Identities = 105/110 (95%), Gaps = 2/110 (2%)
 Strand=Plus/Plus

Query  78   GAAAATAGGATGGACTTGCTTTTACATCGGTGT-GACTGCTGTTGCTTTTGGATCGTCTT  136
            ||||||||||||||||||||||||||||||||| | ||||||||||||||||||| ||||
Sbjct  293  GAAAATAGGATGGACTTGCTTTTACATCGGTGTAG-CTGCTGTTGCTTTTGGATCTTCTT  351

Query  137  ACTATCATCTTCACCCAAATGATGCTGCTCTCCTCTGGGATCGTCTTCCC  186
            ||||||||||||||||||| |||||| |||||||||||||||||||||||
Sbjct  352  ACTATCATCTTCACCCAAACGATGCTACTCTCCTCTGGGATCGTCTTCCC  401



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 18649334879


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5