BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg931110
Length=466
Score E
Sequences producing significant alignments: (Bits) Value
AT4G07526.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 486 6e-137
AT3G33528.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 468 2e-131
AT3G43880.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 333 9e-91
AT3G29790.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 311 4e-84
> AT4G07526.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT3G33528.1);
Has 30201 Blast hits to 17322 proteins in 780 species: Archae
- 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants
- 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI
BLink). | chr4:4358652-4360099 REVERSE LENGTH=768
Length=768
Score = 486 bits (263), Expect = 6e-137
Identities = 330/361 (91%), Gaps = 9/361 (2%)
Strand=Plus/Plus
Query 1 CGAATAGAAAGAATTAAGAGATGGATGATAGTGAAGAATTCTCAGAAGTTCCTGATCTAA 60
|||||| | |||||| |||||||| ||||||| |||||||||||||||||||||||||||
Sbjct 410 CGAATATAGAGAATTGAGAGATGGGTGATAGTCAAGAATTCTCAGAAGTTCCTGATCTAA 469
Query 61 GT-AAGTGGTTTTCGAGTTATGTCTATGAGTCACCGATGTTGGATACAAGTGATGGTCTT 119
|| || |||| |||||||| ||||||||||||||||||| ||||||||||||||||||||
Sbjct 470 GTCAA-TGGTGTTCGAGTTGTGTCTATGAGTCACCGATGATGGATACAAGTGATGGTCTT 528
Query 120 GA------GTTTCTTGGAGAAAGTAAAGGTACAAAGGAAATGGAATTAGTCTCTTCTCAG 173
|| ||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 529 GAGTTTGCGTTTCTTGGAGAAAGTAAAGGTAGAAAGGAAATGGAATTAGTCTCTTCTCAG 588
Query 174 GCTAAAGATATGTCTCAATCACAGGTTGAGTTTTCAGAAGATATAATGAATCTCGTCGTT 233
||||||| ||||||||| || ||| |||||||||||||||||||||||||||||||||||
Sbjct 589 GCTAAAGTTATGTCTCATTCGCAGATTGAGTTTTCAGAAGATATAATGAATCTCGTCGTT 648
Query 234 GAGGACAGTGACATAGATGAAGACTGCAGTATTTGGGGAAAATCTAATAGAAAAGGTAGC 293
||||||||||| |||||||||||| |||| ||||||||||| |||| ||||||||||||
Sbjct 649 GAGGACAGTGAGATAGATGAAGACAACAGTCTTTGGGGAAAACCTAAGAGAAAAGGTAGC 708
Query 294 AGTATTTTTCGAGAACCTAAGAGAAAGGAAGAGACTACAACAACCTGTGAAGCTGAGCTA 353
| | |||||||| ||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 709 AAT-TTTTTCGAAAACCTAAGAGAAAGGAAGAGACTACAACAACCTATGAAGCTGAGCTA 767
Query 354 A 354
|
Sbjct 768 A 768
> AT3G33528.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: cellular_component unknown; BEST Arabidopsis
thaliana protein match is: unknown protein (TAIR:AT4G07526.3);
Has 57 Blast hits to 57 proteins in 2 species: Archae -
0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 57; Viruses
- 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:14082795-14084346
REVERSE LENGTH=765
Length=765
Score = 468 bits (253), Expect = 2e-131
Identities = 339/380 (89%), Gaps = 8/380 (2%)
Strand=Plus/Plus
Query 2 GAATAGAAAGAATTAAGAGATGGATGATAGTGAAGAATTCTCAGAAGTTCCTGATCTAAG 61
||||| | |||||| |||||||| ||||||| ||||||||||||||||||||||||||||
Sbjct 384 GAATATAGAGAATTGAGAGATGGGTGATAGTCAAGAATTCTCAGAAGTTCCTGATCTAAG 443
Query 62 T-AAGTGGTTTTCGAGTTATGTCTATGAGTCACCGATGTTGGATACAAGTGATGGTCTTG 120
| || |||| |||||||||| ||||||||||||||||| |||||||||||||||||||||
Sbjct 444 TCAA-TGGTGTTCGAGTTATATCTATGAGTCACCGATGATGGATACAAGTGATGGTCTTG 502
Query 121 AGTTT-CTT-----GGAGAAAGTAAAGGTACAAAGGAAATGGAATTAGTCTCTTCTCAGG 174
|||| ||| |||||||||||| ||| ||||||||||||||||||||||||||| |
Sbjct 503 GGTTTGCTTTTCTTGGAGAAAGTAAAAGTATAAAGGAAATGGAATTAGTCTCTTCTCACG 562
Query 175 CTAAAGATATGTCTCAATCACAGGTTGAGTTTTCAGAAGATATAATGAATCTCGTCGTTG 234
|||||||||||||||| || || ||||||||||||||||||| ||||||||||||||||
Sbjct 563 CTAAAGATATGTCTCAGTCCCAAATTGAGTTTTCAGAAGATATTATGAATCTCGTCGTTG 622
Query 235 AGGACAGTGACATAGATGAAGACTGCAGTATTTGGGGAAAATCTAATAGAAAAGGTAGCA 294
|||||||||| |||||||||||| |||| ||||||||||| |||| |||||||||||||
Sbjct 623 AGGACAGTGAGATAGATGAAGACAACAGTCTTTGGGGAAAACCTAAGAGAAAAGGTAGCA 682
Query 295 GTATTTTTCGAGAACCTAAGAGAAAGGAAGAGACTACAACAACCTGTGAAGCTGAGCTAA 354
| |||| ||| |||||||||||||||| |||||||||||||||| ||||||||||||||
Sbjct 683 ATGTTTTCCGAAAACCTAAGAGAAAGGATGAGACTACAACAACCTATGAAGCTGAGCTAA 742
Query 355 CTTCCTTGAGGAATCGAGTC 374
|| ||||| ||| ||||||
Sbjct 743 ATTACTTGAAGAACCGAGTC 762
> AT3G43880.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT4G07526.3);
Has 32 Blast hits to 32 proteins in 2 species: Archae - 0;
Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 32; Viruses
- 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:15738173-15738616
REVERSE LENGTH=264
Length=264
Score = 333 bits (180), Expect = 9e-91
Identities = 239/266 (90%), Gaps = 9/266 (3%)
Strand=Plus/Plus
Query 96 ATGTTGGATACAAGTGATGGTCTTGA----G--TTTCTTGGAGAAAGTAAAGGTACAAAG 149
||| |||||||||| |||||||||| | ||||||||||||| |||||||||||||
Sbjct 1 ATGATGGATACAAGCAATGGTCTTGAGTTTGCTTTTCTTGGAGAAATTAAAGGTACAAAG 60
Query 150 GAAATGGAATTAGTCTCTTCTCAGGCTAAAGATATGTCTCAATCACAGGTTGAGTTTTCA 209
||||||||||||||||||||| ||||||||||||||||||| || || ||||||||||||
Sbjct 61 GAAATGGAATTAGTCTCTTCTGAGGCTAAAGATATGTCTCAGTCGCAAGTTGAGTTTTCA 120
Query 210 GAAGATATAATGAATCTCGTCGTTGAGGACAGTGACATAGATGAAGACTGCAGTATTTGG 269
|||||||| ||||||||||||||||| || ||||| ||||||||||||||||||||||||
Sbjct 121 GAAGATATTATGAATCTCGTCGTTGAAGAAAGTGAGATAGATGAAGACTGCAGTATTTGG 180
Query 270 GGAAAATCTAATAGAAAAGGTAGCAGTATTTT-TCGAGAACCTAAGAGAAAGGAAGAGAC 328
|||||| |||| ||||||||||| |||||||| | || ||| ||| ||||||||||||||
Sbjct 181 GGAAAACCTAAGAGAAAAGGTAG-AGTATTTTCT-GAAAACATAAAAGAAAGGAAGAGAC 238
Query 329 TACAACAACCTGTGAAGCTGAGCTAA 354
||||||||||| ||||||||||||||
Sbjct 239 TACAACAACCTATGAAGCTGAGCTAA 264
> AT3G29790.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT3G33528.1);
Has 40 Blast hits to 40 proteins in 2 species: Archae - 0;
Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 40; Viruses
- 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:11693095-11693622
REVERSE LENGTH=435
Length=435
Score = 311 bits (168), Expect = 4e-84
Identities = 217/240 (90%), Gaps = 6/240 (3%)
Strand=Plus/Plus
Query 103 ATACAAGTGATGGTCTTGA----G--TTTCTTGGAGAAAGTAAAGGTACAAAGGAAATGG 156
||||||| ||||||||||| | ||||||||||||||||| |||||||||||||||
Sbjct 8 ATACAAGCGATGGTCTTGAGTTTGCTTTTCTTGGAGAAAGTAATGGTACAAAGGAAATGA 67
Query 157 AATTAGTCTCTTCTCAGGCTAAAGATATGTCTCAATCACAGGTTGAGTTTTCAGAAGATA 216
|||||||||||||| | ||||||||||||||||| || || |||||||||||||||||||
Sbjct 68 AATTAGTCTCTTCTGATGCTAAAGATATGTCTCAGTCGCAAGTTGAGTTTTCAGAAGATA 127
Query 217 TAATGAATCTCGTCGTTGAGGACAGTGACATAGATGAAGACTGCAGTATTTGGGGAAAAT 276
| |||||||||||||||| |||||||| ||||||||||| ||||||||||||||||||
Sbjct 128 TTGTGAATCTCGTCGTTGAAGACAGTGAGATAGATGAAGATTGCAGTATTTGGGGAAAAC 187
Query 277 CTAATAGAAAAGGTAGCAGTATTTTTCGAGAACCTAAGAGAAAGGAAGAGACTACAACAA 336
|||| |||||||||||||||||||| ||| ||||||||||||||||||||||||||||||
Sbjct 188 CTAAGAGAAAAGGTAGCAGTATTTTCCGAAAACCTAAGAGAAAGGAAGAGACTACAACAA 247
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 22153258827
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5