BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg931116
Length=437
Score E
Sequences producing significant alignments: (Bits) Value
AT1G80700.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 318 2e-86
AT1G80980.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 313 1e-84
AT3G03460.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 237 7e-62
> AT1G80700.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: mitochondrion; BEST Arabidopsis thaliana protein
match is: unknown protein (TAIR:AT1G80980.1); Has 476
Blast hits to 340 proteins in 85 species: Archae - 2; Bacteria
- 44; Metazoa - 84; Fungi - 36; Plants - 40; Viruses - 0;
Other Eukaryotes - 270 (source: NCBI BLink). | chr1:30331922-30333400
FORWARD LENGTH=868
Length=868
Score = 318 bits (172), Expect = 2e-86
Identities = 204/220 (93%), Gaps = 0/220 (0%)
Strand=Plus/Plus
Query 218 AGCTAATGGAGATGAAACAGAGACTGGGAAAAATCGAAGAGCCAATAAAAGAGATTGTTT 277
||||||||||||||| ||||||||||||||||||||||||| |||||||||| |||||||
Sbjct 502 AGCTAATGGAGATGAGACAGAGACTGGGAAAAATCGAAGAGACAATAAAAGAAATTGTTT 561
Query 278 TGGAAACCAATAAACCTTCTGGGAAAGCTCCAACCAAAACCCAAGAAGATCAATATACTA 337
|||||||||| |||||||| ||||| |||||||||||||||||||||||||||| |||||
Sbjct 562 TGGAAACCAAGAAACCTTCAGGGAATGCTCCAACCAAAACCCAAGAAGATCAATCTACTA 621
Query 338 AACTCTCCCCAAAAGAAGAATCAAAACCAGAAAAAGAATATAAGGGCAATGTACAGAAAC 397
|||||||||||||||||| |||| | |||||||||||| | |||||||||||||||||||
Sbjct 622 AACTCTCCCCAAAAGAAGTATCACAGCCAGAAAAAGAACACAAGGGCAATGTACAGAAAC 681
Query 398 CAGCTGATGGACTTCATTGAGATTATTAGAAGGGAAACTT 437
||| |||||||| ||| |||||| ||||||||||||||||
Sbjct 682 CAGGTGATGGACCTCACTGAGATGATTAGAAGGGAAACTT 721
> AT1G80980.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: mitochondrion; BEST Arabidopsis thaliana protein
match is: unknown protein (TAIR:AT1G80700.1); Has 477
Blast hits to 341 proteins in 85 species: Archae - 2; Bacteria
- 44; Metazoa - 78; Fungi - 37; Plants - 42; Viruses - 0;
Other Eukaryotes - 274 (source: NCBI BLink). | chr1:30422058-30424087
REVERSE LENGTH=1418
Length=1418
Score = 313 bits (169), Expect = 1e-84
Identities = 204/221 (92%), Gaps = 2/221 (1%)
Strand=Plus/Plus
Query 218 AGCTAATGGAGATGAAACAGAGACTGGGAAAAATCGAAGAGCCAATAAAAGAGATTGTTT 277
||||||||||||||| ||||||||||||||||||||||||| |||||||||| |||||||
Sbjct 1093 AGCTAATGGAGATGAGACAGAGACTGGGAAAAATCGAAGAGACAATAAAAGAAATTGTTT 1152
Query 278 TGGAAACCAATAAACCTTCTGGGAAAGCTCCAACCAAAACCCAAGAAGATCAAT-ATACT 336
|||||||||| |||||||| ||||| |||||||||||||||||||||||||||| | |||
Sbjct 1153 TGGAAACCAAGAAACCTTCAGGGAATGCTCCAACCAAAACCCAAGAAGATCAATCA-ACT 1211
Query 337 AAACTCTCCCCAAAAGAAGAATCAAAACCAGAAAAAGAATATAAGGGCAATGTACAGAAA 396
||||||||||||||||||| |||| | |||||||||||| | ||||||||||||||||||
Sbjct 1212 AAACTCTCCCCAAAAGAAGTATCACAGCCAGAAAAAGAACACAAGGGCAATGTACAGAAA 1271
Query 397 CCAGCTGATGGACTTCATTGAGATTATTAGAAGGGAAACTT 437
|||| |||||||| ||| |||||| ||||||||||||||||
Sbjct 1272 CCAGGTGATGGACCTCACTGAGATGATTAGAAGGGAAACTT 1312
> AT3G03460.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT5G17510.1);
Has 19732 Blast hits to 8747 proteins in 456 species: Archae
- 0; Bacteria - 449; Metazoa - 7438; Fungi - 2099; Plants
- 1550; Viruses - 53; Other Eukaryotes - 8143 (source: NCBI
BLink). | chr3:822937-824546 REVERSE LENGTH=1258
Length=1258
Score = 237 bits (128), Expect = 7e-62
Identities = 130/131 (99%), Gaps = 0/131 (0%)
Strand=Plus/Plus
Query 1 CAACAACAACAGCAGAAATTGATGCGTCCATCGAATCAATTGGAGATACAATTCGCTTAC 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 383 CAACAACAACAGCAGAAATTGATGCGTCCATCGAATCAATTGGAGATACAATTCGCTTAC 442
Query 61 CAAGACGCTTGGCGTGTTTGTCATCCTGATTTCAAGCGACCTTTCGCTTCTCTCGAAGAC 120
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 443 CAAGACGCTTGGCGTGTTTGTCATCCTGATTTCAAACGACCTTTCGCTTCTCTCGAAGAC 502
Query 121 GCTTGTGAAAG 131
|||||||||||
Sbjct 503 GCTTGTGAAAG 513
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 20760580337
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5