BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg931123
Length=1346
Score E
Sequences producing significant alignments: (Bits) Value
AT2G13840.1 | Symbols: | Polymerase/histidinol phosphatase-lik... 2080 0.0
> AT2G13840.1 | Symbols: | Polymerase/histidinol phosphatase-like
| chr2:5788552-5791126 REVERSE LENGTH=1438
Length=1438
Score = 2080 bits (1126), Expect = 0.0
Identities = 1270/1341 (95%), Gaps = 4/1341 (0%)
Strand=Plus/Plus
Query 8 CACAATCTCCAACAATGGCTGACGATaagaagaagcggaacaagaagaagaagcgtggta 67
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 56 CACAATCTCCAACAATGGCTGACGATAAGAAGAAGCGGAACAAGAAGAAGAAGCGTAGTA 115
Query 68 gtggtaacaagaagaagaTGACCACTGAGCAATCAGAGGCCTTTAAGTCCGTCACCGATT 127
||||||||||| |||||||||||||||||||||||| ||||||||||| |||||||||
Sbjct 116 CTGGTAACAAGAGGAAGATGACCACTGAGCAATCAGAAGCCTTTAAGTCAATCACCGATT 175
Query 128 GGCTCTTCGTAGGTTCTTCTCCATCTCTCTCCTCTTCCTCTGATGACTTTGCCGTTACCA 187
||||| || |||||||||||||||||||||||||||||||||||||||||||||| | ||
Sbjct 176 GGCTCATCTTAGGTTCTTCTCCATCTCTCTCCTCTTCCTCTGATGACTTTGCCGTCAACA 235
Query 188 TCAATTCTAGTTCTTTGAGATGCGGAGAGAAA-TTGGTGTTCGAGCTTCACTCTCATTCA 246
|||||||| ||||| | ||||| ||||||||| || ||||| |||||||| |||||||||
Sbjct 236 TCAATTCTGGTTCTCTAAGATGTGGAGAGAAAGTT-GTGTTTGAGCTTCATTCTCATTCA 294
Query 247 AATCGCAGCGATGGGTTTTTATCGCCGTCAAAGCTCGTGGAGAGGGCTCATAACAATGGG 306
|||||||||||||||||| |||| || |||||| |||||||||||||| |||||||||||
Sbjct 295 AATCGCAGCGATGGGTTTCTATCACCTTCAAAGGTCGTGGAGAGGGCTTATAACAATGGG 354
Query 307 GTGAAAGTTCTTTCTTTAACGGATCATGATACGATGGCTGGTATCCCGGAAGCTGTGGAA 366
|||||||||||||||||||||||||||||||| ||||||||| |||||||||| ||||||
Sbjct 355 GTGAAAGTTCTTTCTTTAACGGATCATGATACTATGGCTGGTGTCCCGGAAGCAGTGGAA 414
Query 367 GCAGGACGTAGGTTCGGTATCAAGATCATTCCGGGTATTGAGATCAGTACATTATTCGGT 426
||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 415 GCAGGACGTAGATTCGGTATCAAGATCATTCCGGGTATTGAGATCAGCACATTATTCGGT 474
Query 427 TCAAGAGACTCTGGGTCTGAGGAGCCAGTGCATATACTTGCGTACTATGGCACTTCCGGA 486
| ||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 475 TTAAGAGACTCCGGGTCTGAGGAGCCAGTGCATATACTTGCGTATTATGGCACTTCCGGT 534
Query 487 CCAGCAATGTATGATGAGTTGGAAGATTTCTTGGTGAAGATAAGAGATGGGCGTTTCGTT 546
|||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 535 CCAGCATTATATGATGAGTTGGAAGATTTCTTGGTGAAGATAAGAGATGGGCGTTTCGTT 594
Query 547 CGCGGGAGAGAAATGGTCTTGAAATTGAATAAGTTGAAGGTACCTCTAAAATGGGAACAT 606
|| |||||||||||||| ||||||||||||||| | ||| ||||| |||||||||| |||
Sbjct 595 CGTGGGAGAGAAATGGTATTGAAATTGAATAAGCTAAAGATACCTTTAAAATGGGAGCAT 654
Query 607 GTCACCAGGATTGCAGGCAAGGATGTTGCTCCGGGTAGAATGCACGTAGCCCGAGCGCTT 666
|| |||||||||||||||||||||||||| |||||||| ||||| |||||||||||||||
Sbjct 655 GTTACCAGGATTGCAGGCAAGGATGTTGCCCCGGGTAGGATGCATGTAGCCCGAGCGCTT 714
Query 667 CTTGAAGCAGGATACGTGGAGAATTTGAGACAAGCTTTCACTAAATATTTACATGATGGT 726
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 715 CTTGAAGCAGGCTACGTGGAGAATTTGAGACAAGCTTTCACTAAATATTTACATGATGGT 774
Query 727 GGACCTGCTTATTCCACAGGGAGC-GAGCCTATGGCCGAGGAAGCAGTAAAACTTATATG 785
|||||||||||| | ||||||| | |||||||||||||||||||||||||||||||||||
Sbjct 775 GGACCTGCTTATGCTACAGGGA-CTGAGCCTATGGCCGAGGAAGCAGTAAAACTTATATG 833
Query 786 CAAAACCGGTGGTGTAGCTGTTCTTGCACATCCGTGGGCGTTGAAGAATCATGTTGGTGT 845
||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||| |
Sbjct 834 CAAAACCGGTGGTGTAGCTGTGCTTGCACATCCGTGGGCGTTGAAGAATCATGTCGGTAT 893
Query 846 TATTAGGAGATTGAAAGATGCTGGACTTCATGGGGTTGAGGTTTATAGGAGCGACAGCAA 905
||||||||||||||| |||||||||||||||||||| |||||||||||||||||| ||||
Sbjct 894 TATTAGGAGATTGAAGGATGCTGGACTTCATGGGGTCGAGGTTTATAGGAGCGACGGCAA 953
Query 906 GTTAGAAGTGTTTAGCGAGTTGGCTGATACATACAGTCTGCTAAAGCTAGGAGGATCAGA 965
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 954 GTTAGAAGTGTTTAGCGAGTTGGCTGATACATACAATCTGCTAAAGCTAGGAGGATCAGA 1013
Query 966 TTATCATGGAAAAGGCGGACGCAATGAATCAGAATTGGGGAGTGTAAACCTTCCCGTGAC 1025
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1014 TTATCATGGAAAAGGCGGACGCAATGAATCAGAATTGGGGAGTGTAAACCTTCCCGTGAC 1073
Query 1026 GGCATTGCAGGATTTCTTGAACGTTGGACGTCCTCTATGGTGTGAGGCCATTAAAGCAAC 1085
|||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1074 GGCATTGCAGGACTTCTTGAACGTTGGACGTCCTATATGGTGTGAGGCCATTAAAGCAAC 1133
Query 1086 CATGAAAGCATTTCTTGCCCAACCATCCGATTCAAACCTCTCCAATATCTTAAGGTTCGA 1145
||||| |||||| |||| ||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1134 CATGAGAGCATTCCTTGACCAACCATCAGATTCAAACCTCTCCAATATCTTAAGGTTCGA 1193
Query 1146 TAGGGCAAGGATTCTGAAAGGAAATTCAGCTTGGTCCTGTGGTAAGGAGTTGATGGACCG 1205
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1194 TAAGGCAAGGATTCTGAAAGGAAATTCAGCTTGGTCCTGTGGTAAGGAGTTGATGGACCG 1253
Query 1206 ATGCTTAGCGATTTGGTTGACGAGTGATGAGAGAAAAAGCAATGACTTTGAGGCTCTCAG 1265
||| ||||||||||||||||| |||||||||||||| |||||||||||||||||||||||
Sbjct 1254 ATGTTTAGCGATTTGGTTGACCAGTGATGAGAGAAACAGCAATGACTTTGAGGCTCTCAG 1313
Query 1266 ATTGAAGCTCTCTTTTGTACCAATCACGTCAAACGGATCATGTGTCACAGTTGGTCCTTA 1325
|||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||
Sbjct 1314 ATTGAAGCTCTCTTTTGTACCAATCATGTCAAACGGAACATGTGTCACAGTTGGTCCTTA 1373
Query 1326 AATTTTTGGTCTGGTCTCTTT 1346
||| ||| |||||||||||||
Sbjct 1374 AATATTTAGTCTGGTCTCTTT 1394
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 66264719400
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5