BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg931130
Length=514
Score E
Sequences producing significant alignments: (Bits) Value
AT5G25760.1 | Symbols: PEX4, UBC21 | peroxin4 | chr5:8967655-89... 719 0.0
> AT5G25760.1 | Symbols: PEX4, UBC21 | peroxin4 | chr5:8967655-8969349
FORWARD LENGTH=745
Length=745
Score = 719 bits (389), Expect = 0.0
Identities = 461/496 (93%), Gaps = 3/496 (1%)
Strand=Plus/Plus
Query 3 TTTTGGACAATTAGAGAGATGCAGGCATCAAGAGCGAGACTCTTTAAAGAATACAAAGAG 62
||| ||| |||| |||||||||||||||||||||| |||| ||||||||||||||||||
Sbjct 81 TTTGGGA-AATT--AGAGATGCAGGCATCAAGAGCGCGACTGTTTAAAGAATACAAAGAG 137
Query 63 GTTCAGCGAGAGAAAGTAGCTGATCCAGATATTCAATTGGTGTGTGACGATACCAACATA 122
|| ||||||||||||||||| ||||| |||||||||||| | ||||||||||||||||||
Sbjct 138 GTACAGCGAGAGAAAGTAGCAGATCCTGATATTCAATTGATCTGTGACGATACCAACATA 197
Query 123 TTCAAATGGACCGCTCTTATCAAGGGACCGTCAGAGACTCCTTATGAAGGCGGTGTTTTT 182
||||||||||||||||||||||| ||||| || ||||||||||| |||||||||||||||
Sbjct 198 TTCAAATGGACCGCTCTTATCAAAGGACCTTCGGAGACTCCTTACGAAGGCGGTGTTTTT 257
Query 183 CAGCTTGCTTTTGCTGTTCCTGAACCATATCCTTTGCAACCTCCTCAAGTACGATTCTTG 242
|||||||||||| ||||||||||||| ||||||||||||||||||||||| |||||||||
Sbjct 258 CAGCTTGCTTTTTCTGTTCCTGAACCTTATCCTTTGCAACCTCCTCAAGTTCGATTCTTG 317
Query 243 ACCAAAATATTTCATCCAAATGTGCATTTCAAGACAGGGGAAATATGCCTCGACATATTG 302
||||| ||||| ||||| ||||| |||||||||||||| |||||||| |||||||| |||
Sbjct 318 ACCAAGATATTCCATCCTAATGTTCATTTCAAGACAGGAGAAATATGTCTCGACATTTTG 377
Query 303 AAGAATGCGTGGAGTCCCGCTTGGACGCTTCAGTCCGTGTGTAGAGCTATCATAGCATTG 362
|||||||| |||||||| ||||||||||||||||| ||||||||||||||||||||||||
Sbjct 378 AAGAATGCTTGGAGTCCTGCTTGGACGCTTCAGTCTGTGTGTAGAGCTATCATAGCATTG 437
Query 363 ATGGCTCATCCTGAGCCGGACAGTCCTCTTAACTGCGACTCAGGTAATCTTCTAAGATCT 422
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 438 ATGGCTCATCCTGAGCCGGACAGTCCTCTTAACTGCGACTCAGGGAATCTTCTAAGATCT 497
Query 423 GGGGATGTGAGAGGGTTCAATTCAATGGCACGCATGTACACACGCCTCGCCGCAATGCCA 482
|| |||||||||||||||||||||||||||| ||||| |||||||||||||| |||||
Sbjct 498 GGTGATGTGAGAGGGTTCAATTCAATGGCACAAATGTATACACGCCTCGCCGCTATGCCT 557
Query 483 AAGAAAGGATGATGAT 498
||||||||||||||||
Sbjct 558 AAGAAAGGATGATGAT 573
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 24564497883
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5