BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg931132
Length=314
Score E
Sequences producing significant alignments: (Bits) Value
AT5G48390.1 | Symbols: ATZIP4 | Tetratricopeptide repeat (TPR)-... 215 2e-55
> AT5G48390.1 | Symbols: ATZIP4 | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr5:19612062-19615383 FORWARD
LENGTH=2847
Length=2847
Score = 215 bits (116), Expect = 2e-55
Identities = 172/198 (87%), Gaps = 8/198 (4%)
Strand=Plus/Plus
Query 68 TGCACTTGCAAAAGGGAGAGTAT-GAGAGTATGATCAAATGTGT-ACAAGTTCTCAA-GA 124
|||| ||||| |||||||||| | |||| | |||| |||||||| | ||||||| || ||
Sbjct 876 TGCATTTGCAGAAGGGAGAGT-TCGAGAATGTGATAAAATGTGTGA-AAGTTCT-AAGGA 932
Query 125 ATGGAGGAAAT-TTCAGGGATGGAGCACATCGACATGCTCCATTACATGTGTTGGCGATG 183
||||||||||| | || |||||||| ||| ||||||| |||||| |||||||||||||
Sbjct 933 ATGGAGGAAATGGT-AGTGATGGAGCTGATCAACATGCTTCATTACCTGTGTTGGCGATG 991
Query 184 AAGTCTTGGTTAGGACTTGGGAGGCATAGTGAGGCAGAGGAGGAGCTAAGAGGTATGGTA 243
||| ||||||||||||||||||||||||||||||||||| ||||||| |||||||||||
Sbjct 992 AAGGCTTGGTTAGGACTTGGGAGGCATAGTGAGGCAGAGAAGGAGCTGAGAGGTATGGTG 1051
Query 244 GGAAACAAAGACATTCCA 261
|||||||| || ||||||
Sbjct 1052 GGAAACAATGATATTCCA 1069
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 14577647210
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5