BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg931135
Length=746
Score E
Sequences producing significant alignments: (Bits) Value
AT2G14095.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 1166 0.0
> AT2G14095.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: mitochondrion; EXPRESSED IN: 7 plant structures;
EXPRESSED DURING: 4 anthesis, C globular stage, petal
differentiation and expansion stage; Has 106 Blast hits to 103
proteins in 21 species: Archae - 0; Bacteria - 5; Metazoa
- 0; Fungi - 4; Plants - 87; Viruses - 0; Other Eukaryotes
- 10 (source: NCBI BLink). | chr2:5932383-5933791 REVERSE LENGTH=867
Length=867
Score = 1166 bits (631), Expect = 0.0
Identities = 712/751 (95%), Gaps = 5/751 (1%)
Strand=Plus/Plus
Query 1 TTGATTTCATAAACCGGATTGAAAATGTATCTAAGTCGGAGAATACAGAGCGGAGGTTTT 60
||||||||||||| |||||||| |||||||||||||||||||| |||||||||||||||
Sbjct 19 TTGATTTCATAAAACGGATTGATGATGTATCTAAGTCGGAGAATGCAGAGCGGAGGTTTT 78
Query 61 GCGGTCTATAGGCAGGGCCTTGCAGAGGTCTTACAAATATACAACAAAGTTGAGAGGAAG 120
||||| ||| | ||||||||||| || |||||||||||||| |||||||||||||||||
Sbjct 79 GCGGTGTATCGACAGGGCCTTGCGGAAGTCTTACAAATATATAACAAAGTTGAGAGGAAA 138
Query 121 ACAACTTTGAATCCATATCCGGCGATTGTTCGATTTGGAAGAGACTATCATAACCAAATG 180
||| || ||||||||| |||||||||| |||||||||||||||||||||||||||||||
Sbjct 139 ACATCTATGAATCCATGTCCGGCGATTATTCGATTTGGAAGAGACTATCATAACCAAATA 198
Query 181 TGTCCACAAGGTCTCAAGTTATCAAATCCGCTTAATGCCGGGAGATACTTTAGTAATGGT 240
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 199 TGTCCACAAGGTCTCAAGTTATCAAATCCGCTTAATGCCGGGAGATACTTTAGTAATGTT 258
Query 241 TCCAACAACTCCAATATGCAACCTTCTCCTCCAAACCAGTGGTTTAATTTT---TCTTGG 297
||||| ||||||| |||||||||||||||||||||||||||||||||||| ||||||
Sbjct 259 TCCAATGACTCCAAGATGCAACCTTCTCCTCCAAACCAGTGGTTTAATTTTCCCTCTTGG 318
Query 298 GGAAGATGGGTTATTGGTTCTGCGATATCCTTAGTGTTATCTTTCTGGAACAACGAAAGG 357
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 319 GGAAGATGGGTTATAGGTTCTGCGATATCCTTAGTGTTATCTTTCTGGAACAACGAAAGG 378
Query 358 ATACAAAAACTGAAACGGATCGAAGGAGAGGCAGAGTTGGTAGTGGAAGGGGTAGAGGCT 417
|||||||||||||||| || ||||||||||| |||||||| ||||||||||||||||||
Sbjct 379 TTACAAAAACTGAAACGAATAGAAGGAGAGGCGGAGTTGGTTGTGGAAGGGGTAGAGGCT 438
Query 418 GTAGCAGAAATGGTGGAGAAAGTAGCGACGGCGACTGACGAAATGGCTGAAGAAATGGCA 477
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 439 GTAGCAGAAATGGTGGAGAAAGTAGCGACGGCGACTGACGAAATGGCTGAAGAAATGGCA 498
Query 478 GAGAAACTGCCTGAGAAAAATAAACTAAAACAAGTGGCTTTGGTTCTAGAACATATTTCA 537
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 499 GAGAAACTGCCTGAGAAAAATAAACTAAAACAAGTGGCTTTGGTTCTAGAACACATTTCA 558
Query 538 GAGGTCGCTGCCCATGAAGCACATTTAACCCAAGAGTTCCTTCACAAGGTGGAAAAAGTC 597
||||| |||||||||||||||||| |||||||||| ||||||||||||||||||||||||
Sbjct 559 GAGGTTGCTGCCCATGAAGCACATCTAACCCAAGATTTCCTTCACAAGGTGGAAAAAGTC 618
Query 598 ACACAAGATATAGATGACTTGGAGGCAATGATAAAGCCTTTGATAGACAAAAAAGTGGCA 657
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 619 ACACAAGATATAGATGACTTGGAGGCAATGATAAAGCCTTTGATAGACAAAAAAGTGGCA 678
Query 658 AATGCTGAAACTAAGCATCAAAGTAAAGAAGAAGAAGCAAACCCTGAGTCGCCTTCACGC 717
||||||||||| ||||| |||| |||||||||||||||||||| ||||||||||||||||
Sbjct 679 AATGCTGAAACAAAGCAACAAACTAAAGAAGAAGAAGCAAACCATGAGTCGCCTTCACGC 738
Query 718 CACTAATCTCTTCATATATC--ATCTAATTT 746
|||||||||||||||||||| |||||||||
Sbjct 739 CACTAATCTCTTCATATATCTCATCTAATTT 769
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36218819987
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5